Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02044 ATGGGGAAGAAAGAAGCCCTTTTGTTGCTGTTGATTATTGCTGTTTTGGGAAAGGCAATTGGGATTACGGAGGAAGGAGAAGAAGAATGGTGGAGAGAGAGAGAGGAAGAGAGAGAGTTTGGAACGAAAGAAAAGTTTCTGTTGGAGGATTCGAAGCAAGTGATAGAGACAGAAGCAGGAGAAATGAGGGTGATGAGAAGTCCAGTTTCAAGAATTCTTGACAGGCCCATGCACATCGGCTTCATCACCATGGAACCCAAGTCCTTGTTTGTCCCTCAGTATTTGGACTCCAGCTTGATTCTCTTCGTCCGTAGAGGGGATGTGAAAGTGGGATTGATTTACAAAGACGAGTTAGCAGAGAGGAGGATGAAGGGCGGGGACGTGTTCCGAATCCCAGCCGGTTCAGTATTTTACATGGTGAATGTAGGGGAAGGACAGAGACTTCAGATTATCTGCAGCATTGATAAATCTGAGAGTTTGAGTTACGGTTCTTTCCAGTCGTTCTTCGTAGCCGGAGGAACCTATCCGGCGTCAGTTCTTGCCGGTTTCGACCAGGATACACTAGCTACAGCATTTAATGTTTCTTATACAGAACTGAAGAGGATTCTATCGAGACAACGACAGGGACCAATTGTCTACATCTCGGATACTGAATCGCCTAGGGTTTGGAGTAAGTTTTTGCAAGTGAAAGATGAAGCCATACTTGTCGATGAAGATGGCGAAGAAGCGGAGAAGAATAAGCCATGGTCGTGGAGGAAGCTCATGGTTTCGGTCTTTGGAAACAAAAATCGGGACAGAAGTGAAAAAACAAAAAGAACAGGAAAATCCCCCGATTCATACAACCTCTACGACAAAAACCCAGACTTCAGCAACGCCTACGGATGGAGCGTTGCCCTAGACGAAGCCGAGTACCATCCTCTAGGTCACTCCGGAATCGGAGTTTATCTAGTCAATCTCACAGCGGGATCAATGATGGCGCCGCACGTGAATCCAACCGCAGCTGAGTACGGCATCGTCCTCAGAGGCACAGGTACAATACAGATCGTGTATCCGAACGGAACCTCCGCCATGAACGCAGAAGTAACCGAAGGGGACGTATTCTGGGTTCCAAGATACTTCCCATTCTGTCAAATCGCATCGAGAACAGGTCCATTCGAGTTCTTCGGATTCACTACGTCGTCGCGCAAGAATCGGCCGCAGTTCTTGGCCGGTGCGAGTTCGATTTTCCACACTCTGAGAAGCCCGGAGATGGCGACGGCTTTCGACATAACAGAGGACGACCTGGAGCGGTTGCTGGGGGCGCAGTATGAGGCGATTATTCTGCCGTCGGCAGAGATAGCGCCGCCGCACAAGGAGGAGGAGAAGAGGAGGAGGAAAGAGGGAGAGAGGAGGGAGAGGGAAAGGGAAAGGGAAAGGGAAAGGGAAAGGGAAAGGAGAGTGGTTGAGGCGATTAGAAGCTTTGGAAGGGATATGACAATAAAATATATTCTCGTAATAATATATGAATCCATGTTTAAATTTGTACTATATGTGTGTGTGATTAAAAAGGCATCCCTCTGCAGAGCTGAAGTTTTAACCCTAACTGCCGACACCTTCTCCGATAAGGTAAAGGAAAAAGATACTGCATGGTTTGTGAAGTTTTGTGTTCCTTGGTGCAAGCATTGCAAGAATTTAGGATCCTTATGGGAGGACCTGGGGAAGGCAATGGAAGGTGAGGATGAAATTGAGGTTGGTGAAGTTGATTGTGGTTCTAACAAACCAGTTTGTTCTAAAGTTGATATCCATTCATATCCTACTTTTAAGCTTTTCTATGAAGGGGAAGAAGTTGCAAAGTATACAGGTAACGTGTCCTCCCCTTCCTGCTCCTGGCAGTTGTATTGCTTTATTCCAGTTATTAATGAAATGCCCCATTTCATTGTTAAATATAGAAGAGTAGTTCTTTGCCCCTTCCCTCAAGATTCCATTCACACCACTTCACCCCCATGTTGTTCTGACGACATGGGCTACCAGCCTTCTGGTTGGGATATGCCAAATAGAGGCCAGACTTTTTATTTGAAACATTGGTGTTTATTTTTCTTGTTGATAGCAATAGACAAACTGGACATATGCCTTATTGACCACCTAAGTTCTGTTGGAATAGCTTTTTCCCTAAAAGGTAACGAAGAATATTGGAACTCGTTTCAACCTAGGAAGGATCAACATAGCTATCTCTTCAGAGGATTGATCTTCTGTTTCGTCTTTGTTGAACGAGTTGAATGTTGCGATTACGTAGAAGAAACTGTCAGGACGATGTTCAGGAAGTCAACCACCACCGGACACTTGATCTATAAGCTTGGTGGTATTGACAAGCGTGTCATTGAAAGGTTTGAGAAGGAAGCAGCTGAGATGAACAAGAGGTCCTTCAAGTATGCCTGGGTGTTGGACAAGCTTAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGTTTGAAACCACCAAATACTACTGCACCGTTATTGATGCCCCTGGACATCGCGATTTCATTAAGAACATGATTACTGGTACCTCACAAGCTGACTGTGCTGTTCTCATTATTGACTCCACTACTGGTGGTTTTGAAGCTGGTATTTCTAAGGATGGTCAAACCCGTGAGCATGCTTTGCTTGCGTTTACTCTTGGTGTCAAGCAGATGATTTGCTGCTGCAACAAGATGGATGCCACCACCCCGAAGTACTCCAAGGCAAGGTATGATGAAATTGTCAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGATACAACCCTGACAAAATCCCATTTGTCCCCATCTCTGGTTTCGAAGGAGACAACATGATTGAGAGATCAACCAACCTTGATTGGTACAAGGGTCCAACTCTCCTTGAGGCTCTTGACTTGATCCAGGAGCCCAAGAGGCCCTCAGACAAGCCACTCCGTCTTCCACTTCAGGATGTGTACAAGATCGGTGGTATTGGAACTGTACCAGTCGGACGTGTTGAGACTGGTGTCCTCAAACCTGGAATGGTTGTCACTTTTGGCCCTTCTGGATTGACCACTGAAGTTAAGTCTGTTGAGATGCACCACGAAGCTCTCCCTGAGGCCGTTCCTGGCGACAATGTGGGATTCAATGTAAAGAATGTTGCTGTAAAGGATCTCAAGCGTGGTTTCGTTGCTTCCAACTCAAAGGATGACCCTGCCAAGGAGGCTGCCAACTTCACTTCTCAAGTCATTATCATGAACCACCCAGGACAAATTGGCAATGGTTATGCTCCAGTGCTCGATTGCCACACCTCTCACATTGCCGTGAAGTTTGCCGAGATTCAAACCAAGATCGACAGGCGATCTGGTAAGGAACTTGAGAAGGAACCCAAATTCTTAAAGAATGGTGATGCAGGTATGATTAAGATGGTTCCCACCAAGCCCATGGTGGTGGAAACTTTCTCTCAGTACCCTCCTCTCGGACGTTTTGCCGTGAGGGACATGAGACAGACCGTTGCTGTTGGCGTCATCAAGTCCGTCGAAAAGAAGGATCCAAGTGGTGCTAAGGTTACCAAGTCTGCAGTCAAGAAAGGTGGAAAGTGA 3591 46.31 MGKKEALLLLLIIAVLGKAIGITEEGEEEWWREREEEREFGTKEKFLLEDSKQVIETEAGEMRVMRSPVSRILDRPMHIGFITMEPKSLFVPQYLDSSLILFVRRGDVKVGLIYKDELAERRMKGGDVFRIPAGSVFYMVNVGEGQRLQIICSIDKSESLSYGSFQSFFVAGGTYPASVLAGFDQDTLATAFNVSYTELKRILSRQRQGPIVYISDTESPRVWSKFLQVKDEAILVDEDGEEAEKNKPWSWRKLMVSVFGNKNRDRSEKTKRTGKSPDSYNLYDKNPDFSNAYGWSVALDEAEYHPLGHSGIGVYLVNLTAGSMMAPHVNPTAAEYGIVLRGTGTIQIVYPNGTSAMNAEVTEGDVFWVPRYFPFCQIASRTGPFEFFGFTTSSRKNRPQFLAGASSIFHTLRSPEMATAFDITEDDLERLLGAQYEAIILPSAEIAPPHKEEEKRRRKEGERRERERERERERERERRVVEAIRSFGRDMTIKYILVIIYESMFKFVLYVCVIKKASLCRAEVLTLTADTFSDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMEGEDEIEVGEVDCGSNKPVCSKVDIHSYPTFKLFYEGEEVAKYTGNVSSPSCSWQLYCFIPVINEMPHFIVKYRRVVLCPFPQDSIHTTSPPCCSDDMGYQPSGWDMPNRGQTFYLKHWCLFFLLIAIDKLDICLIDHLSSVGIAFSLKGNEEYWNSFQPRKDQHSYLFRGLIFCFVFVERVECCDYVEETVRTMFRKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALPEAVPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGMIKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAVKKGGK 1196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35492147 35507906 + ClCG02G020970.2 Cla02g02044 268170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02044 1196 SUPERFAMILY RmlC-like cupins 50 437 IPR011051 -
Cla02g02044 1196 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 767 977 IPR000795 GO:0003924|GO:0005525
Cla02g02044 1196 Pfam Cupin 51 196 IPR006045 -
Cla02g02044 1196 Pfam Cupin 280 425 IPR006045 -
Cla02g02044 1196 PRINTS GTP-binding elongation factor signature 835 845 IPR000795 GO:0003924|GO:0005525
Cla02g02044 1196 PRINTS GTP-binding elongation factor signature 895 904 IPR000795 GO:0003924|GO:0005525
Cla02g02044 1196 PRINTS GTP-binding elongation factor signature 851 862 IPR000795 GO:0003924|GO:0005525
Cla02g02044 1196 PRINTS GTP-binding elongation factor signature 815 823 IPR000795 GO:0003924|GO:0005525
Cla02g02044 1196 Pfam Elongation factor Tu GTP binding domain 767 968 IPR000795 GO:0003924|GO:0005525
Cla02g02044 1196 Coils Coil 450 478 - -
Cla02g02044 1196 CDD PDI_a_family 525 620 - -
Cla02g02044 1196 CDD cupin_7S_vicilin-like_N 54 215 - -
Cla02g02044 1196 SUPERFAMILY Thioredoxin-like 522 618 IPR036249 -
Cla02g02044 1196 CDD EF1_alpha 767 974 - -
Cla02g02044 1196 Gene3D Translation factors 976 1063 - -
Cla02g02044 1196 SMART Cupin_1_3 46 200 IPR006045 -
Cla02g02044 1196 SMART Cupin_1_3 280 429 IPR006045 -
Cla02g02044 1196 Pfam Thioredoxin 524 617 IPR013766 -
Cla02g02044 1196 MobiDBLite consensus disorder prediction 450 475 - -
Cla02g02044 1196 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 808 823 IPR031157 -
Cla02g02044 1196 Gene3D Jelly Rolls 272 444 IPR014710 -
Cla02g02044 1196 Gene3D Translation factors 1070 1177 - -
Cla02g02044 1196 Pfam Elongation factor Tu C-terminal domain 1069 1176 IPR004160 -
Cla02g02044 1196 Gene3D - 766 973 IPR027417 -
Cla02g02044 1196 CDD EF1_alpha_II 977 1067 - -
Cla02g02044 1196 Gene3D Jelly Rolls 34 225 IPR014710 -
Cla02g02044 1196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 767 996 IPR027417 -
Cla02g02044 1196 CDD cupin_7S_vicilin-like_C 287 438 - -
Cla02g02044 1196 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 767 1180 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cla02g02044 1196 Pfam Elongation factor Tu domain 2 995 1060 IPR004161 GO:0005525
Cla02g02044 1196 SUPERFAMILY Translation proteins 978 1068 IPR009000 -
Cla02g02044 1196 PANTHER TRANSLATION FACTOR 767 1194 - -
Cla02g02044 1196 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 767 1194 - -
Cla02g02044 1196 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 1073 1176 IPR009001 -
Cla02g02044 1196 Gene3D Glutaredoxin 520 620 - -
Cla02g02044 1196 CDD EF1_alpha_III 1070 1173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01892 Cla-Chr1:33712633 Cla02g02044 Cla-Chr2:35492147 1.33E-45 dispersed
Cla02g02044 Cla-Chr2:35492147 Cla06g00765 Cla-Chr6:10170898 0 dispersed
Cla08g00602 Cla-Chr8:17933797 Cla02g02044 Cla-Chr2:35492147 4.49E-07 dispersed
Cla02g02044 Cla-Chr2:35492147 Cla09g00670 Cla-Chr9:6356605 1.88E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02044 K03231 - csv:101213221 859.751