Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02048 ATGGAAATTGATCTGAACCAAACAGCCAGTGAGGTGGGGAAGAATGCATATTGCTATGGAAATTGTGAAGAGGGTCTTTGCAATTGTTGCTTATCCTCTTCAACTTCTTCTTGTTCCTCAAATTCATCGCCAACGCCCGCCTCTTCTTCAACCTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACCTCATTGCCCAAGAAAGGAAATGTAGTTGTCTATTTCCCACAAGGTCACTTGGAACAAATTGCCTCAGCCTCTCCCTTTTCCCCCATGGAGATGCGCACTTTTGACCTTCAGCCACAGATCCTCTGCAGGGTCATCAATGTCCACCTACTTGCCAATAAGGAGAATGATGAGGTCTATACACAGCTTACTCTCCTTCCCTTGCCAGAGTTAGTAGGCACTGGTCTAGAGGGCAAAGAGCTGGAGGAATTGGCGTTGAATGGGGCTGATGGAGATGGGAGTGGAGGGTCGCCTACTAGATCTACACCTCACATGTTCTGCAAAACACTCACAGCGTCTGACACGAGCACCCATGGAGGATTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGTTTCCCTCCTCTGGATTACACTCAGCTTAGGCCATCTCAAGAGCTAATAGCCAAGGACCTGCATGGCGTGGAGTGGAGATTTAAACATATTTACAGAGGTCAACCTAGGCGGCATCTGCTCACTACTGGATGGAGTATTTTTGTAAGCCAAAAGAATCTTACTTCTGGCGATGCAGTGCTGTTTTTAAGGGGTGAAAATGGAGAGTTAAGGTTGGGAATAAGGCGAGCTGTTCGGCCTAGAAATGGTCTTCCTGTTTCAATTGTTGGCAGCCAAAATTCTTGTGCAAACGATCTTGCTCGTGTGGTGAAAGCAATATCCACCAAGAGCACATTTGATGTGTTTTATAATCCAAGGGCATATCATGCACAATTTGTTATATCTTGTCAGAAGTATGTGAAGAGCATCAATAATCCGGTGACTGTAGGCACAAGATTCAAAATGAGATTTGAGATGGATGATTCGCCAGAAAGAAGGTTTAATGGTGTAGTTGTTGGAATTGGTGACATGGATCCCTTTAGATGGCCGAACTCAAAGTGGAGATGCTTAACGGTCCGATGGGATAAAGACAGTGATCATCAAGAACGTGTTTCCCCCTGGGAGATTGATCCTTCTGTTTCTCTCCCACCCTTGAGTGTTCAGTCGTCTCCAAGACTGAAGAAGCTGAGGACTAGTCTGCAGGCAGCCCCACCTAATAACGCCTTTACTGGGAGGGGCGGTTTTATGGACTTTGAGGATTCAATTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATATAGGTGTCGTATCACCCTTTTATGGATGTGATACTGCAAAACGTTCACTGGAGTTTGATGTGCGATCTTCTGCACAACAAAACCAAGTGTCAGGTGGAGTTGAAAAACTCAATATAGGTGATTATGTAAAGGTTCATGCGAACTCTTCTTTCACAGGCTTTATGGAATCTGATAGATTTCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACCAACTAGAAAACCAGAATATAGTTTAGGTGTTTGGGGGAAGTTCAATCTCAGTGACAACTCTTTTAACACATTTCAATCACCAAACTCCAATTTTTATCACATGGCGTCTAATGGTGCCCAAAACATGTATTTCCCTCATAGTGAAATGTACAGTACTGGCCAAGCGGCCATGATGCGCTCAAATGATAGCAACTTTCCAAGAGAGAATGCCTTGTTCAACCCATCTGCTGTTGGTGCTAGTGTTATCAGGACTAAAATGGAAAGGACTAATCATTCACTTGATCGGGAGTCTCTACATCTAGTGTCTGCTCCTCCAACTTTAGGGTCGAATATGAGGAATTCAAAGGATGAAAATGTGAGTGAGAACCCAACTGGCTGTAAACTTTTTGGCTTTTCATTGACTACGGAAACTGCTACAAACATGCAAAGTTCAGGAAAGAGAAGTTGTACCAAGGTTCACAAACAAGGCAGCCTGGTGGGAAGAGCTATTGATCTCTCTAGGCTGAATGGCTATCCCGATCTGATTTCTGAACTGGAGCGGTTGTTTAGCATGGAAGGTCTCTTAAAAGATCCTGATAAAGGATGGCGAGTGTTGTACACTGACAACGAAAATGACGTAATGGTTGTTGGGGATTATCCATGGCGTGACTTCTGTGACGCGGTTTCCAAAATCCATATACACACTCAAGAAGAAGTGGAAAAGATGACAAATGGAGTGATCAGTGATGATACTCAAAGCTGCTTAGACCAGGCTCCTTTATGTATGGAGGCATCAAAATCCTCTTCAGTGGGCCAACCTGATTCTCCTCCAACAGTAGTAAGAGTTTAA 2409 44.33 MEIDLNQTASEVGKNAYCYGNCEEGLCNCCLSSSTSSCSSNSSPTPASSSTYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQIASASPFSPMEMRTFDLQPQILCRVINVHLLANKENDEVYTQLTLLPLPELVGTGLEGKELEELALNGADGDGSGGSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSIFVSQKNLTSGDAVLFLRGENGELRLGIRRAVRPRNGLPVSIVGSQNSCANDLARVVKAISTKSTFDVFYNPRAYHAQFVISCQKYVKSINNPVTVGTRFKMRFEMDDSPERRFNGVVVGIGDMDPFRWPNSKWRCLTVRWDKDSDHQERVSPWEIDPSVSLPPLSVQSSPRLKKLRTSLQAAPPNNAFTGRGGFMDFEDSIRSSKVLQGQENIGVVSPFYGCDTAKRSLEFDVRSSAQQNQVSGGVEKLNIGDYVKVHANSSFTGFMESDRFLKVLQGQEICSLRPPTRKPEYSLGVWGKFNLSDNSFNTFQSPNSNFYHMASNGAQNMYFPHSEMYSTGQAAMMRSNDSNFPRENALFNPSAVGASVIRTKMERTNHSLDRESLHLVSAPPTLGSNMRNSKDENVSENPTGCKLFGFSLTTETATNMQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYPDLISELERLFSMEGLLKDPDKGWRVLYTDNENDVMVVGDYPWRDFCDAVSKIHIHTQEEVEKMTNGVISDDTQSCLDQAPLCMEASKSSSVGQPDSPPTVVRV 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35525066 35531620 - ClCG02G021030.2 Cla02g02048 268174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02048 802 MobiDBLite consensus disorder prediction 630 648 - -
Cla02g02048 802 CDD B3_DNA 167 269 IPR003340 GO:0003677
Cla02g02048 802 Gene3D - 333 402 - -
Cla02g02048 802 Pfam Auxin response factor 296 376 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cla02g02048 802 SMART B3_2 169 271 IPR003340 GO:0003677
Cla02g02048 802 Pfam B3 DNA binding domain 169 270 IPR003340 GO:0003677
Cla02g02048 802 Gene3D - 670 763 - -
Cla02g02048 802 MobiDBLite consensus disorder prediction 629 648 - -
Cla02g02048 802 ProSiteProfiles B3 DNA-binding domain profile. 169 271 IPR003340 GO:0003677
Cla02g02048 802 SUPERFAMILY CAD & PB1 domains 676 753 - -
Cla02g02048 802 PANTHER AUXIN RESPONSE FACTOR 20 790 - -
Cla02g02048 802 SUPERFAMILY DNA-binding pseudobarrel domain 163 280 IPR015300 -
Cla02g02048 802 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 790 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cla02g02048 802 Pfam AUX/IAA family 624 758 IPR033389 -
Cla02g02048 802 Gene3D - 167 271 IPR015300 -
Cla02g02048 802 ProSiteProfiles PB1 domain profile. 674 756 IPR000270 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02284 Cla-Chr1:36703407 Cla02g02048 Cla-Chr2:35525066 6.20E-151 dispersed
Cla02g02048 Cla-Chr2:35525066 Cla06g01783 Cla-Chr6:31246818 1.29E-28 dispersed
Cla02g02048 Cla-Chr2:35525066 Cla01g02432 Cla-Chr1:37937835 3.04E-17 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60727 PF02362 B3 7.00E-21 CL0405 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02048 - - csv:101212503 1502.26