Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02052 ATGACCGTAATCGACATCATCTTCCGAGTCGATTCCATTTGCAAGAAATATGAGAAGTATGATGTCGAGAAACAGCGTGAACTCAATGCTTATGGTGACGATGCCTTTGCTCGCCTCTTCGCCGCCGTCGAACTCGAAATCGACGCCGCTCTCCAGAAATCTGAGGCTGCCTCAACTGAGAAGAATAGAGCTGCTGCAGTTGCAATGAACGCTGAGGTTCGACGGAAGAAGGCTCGATTGATGGATGAAGTCCCTAAGCTTCGTAAATTGGCTCATAAGAAGGTTAAAGGGGTTCCGAAAGAAGAGCCGGAGGTTAGAGATGATCTTGTTCTTGCGCTTGAAGAGAAGATTAAAGCCATACCAGATGGGAGTACCTCAGGAGCCAAACAATCTGGAGGATGGGGGTCCTCCTCCTCATCTAACAATATCAAGTTTGATTCATCAGATGGAAACTTTGAGAGCGAGTATTTCCAGCAAAGTGAAGAATCAAGCCAATTTCGAAATGAGTATGAAATGCGGAAGATGAAACAGGACCAAGGTCTCGATGTCATATCTGAAGGTTTGGATATGCTGAAAAATCTAGCCCATGATATGAATGAGGAATTGGACAGGCAAGTTCCATTAATCGACGAGATCGACGCAAAGGTAGACAAGGTGACTGATGAGATTAAAAATACCAATGTTAGGCTCAAGGAAACGCTCTATGAGGTGAGATCCAGCCAAAACTTCTGCATTGATATTATTCTTCTCTGTATAATTCTTGGAATTGCTTCTTACTTGTACAATATCTTGAGCTGA 798 43.73 MTVIDIIFRVDSICKKYEKYDVEKQRELNAYGDDAFARLFAAVELEIDAALQKSEAASTEKNRAAAVAMNAEVRRKKARLMDEVPKLRKLAHKKVKGVPKEEPEVRDDLVLALEEKIKAIPDGSTSGAKQSGGWGSSSSSNNIKFDSSDGNFESEYFQQSEESSQFRNEYEMRKMKQDQGLDVISEGLDMLKNLAHDMNEELDRQVPLIDEIDAKVDKVTDEIKNTNVRLKETLYEVRSSQNFCIDIILLCIILGIASYLYNILS 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35582092 35585001 + ClCG02G021070.2 Cla02g02052 268178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02052 265 ProSitePatterns Syntaxin / epimorphin family signature. 177 216 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cla02g02052 265 PANTHER SYNTAXIN 1 262 IPR045242 -
Cla02g02052 265 Pfam SNARE domain 208 257 IPR000727 -
Cla02g02052 265 SMART tSNARE_6 166 233 IPR000727 -
Cla02g02052 265 Gene3D - 171 232 - -
Cla02g02052 265 MobiDBLite consensus disorder prediction 124 145 - -
Cla02g02052 265 SUPERFAMILY SNARE fusion complex 167 231 - -
Cla02g02052 265 Coils Coil 209 229 - -
Cla02g02052 265 CDD SNARE_Qc 176 232 - -
Cla02g02052 265 PANTHER SYNTAXIN-72 1 262 - -
Cla02g02052 265 MobiDBLite consensus disorder prediction 122 145 - -
Cla02g02052 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 171 233 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01938 Cla-Chr10:35222601 Cla02g02052 Cla-Chr2:35582092 9.71E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02052 K08506 - csv:101211289 441.039