Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02062 ATGTTTAGGGAGAAGGAGGGAGGGGACCATTTTCCAAATTCTGTCAAACAAAAAACAAAACACACAATAACTCCATCAAGAGCCGTTGGAGGCGGAAGAGTGGAGCAAGGCGAATTCCAAAGCAAAGACTACCAAGACCCACCTCCCGCTCCTCTCATCGACCCTGAAGAACTAACCAAATGGTCTCTTTACAGAGCCGCCATCGCCGAGTTCATCGCCACTCTCCTCTTCCTCTATGTCACCGTTTTGACCGTCATCGGTTACTCCCACCAAAGCGACCCTTCCGTTTCCACCGACCCCTGTAACGGCGTTGGCATCCTCGGTATCGCTTGGGCCTTCGGCGGTATGATTTTCATCCTTGTTTACTGCACCGCTGGTATCTCCGGTGGCCACATTAACCCCGCCGTCACTTTCGGCCTCTTCTTAGCTCGCAAAGTCTCTCTGGTTCGTGCTCTGTTGTACATCATTGCTCAGTGCGCCGGTGCTATTTGCGGCTGTGGCTTGGTTAGAGCCTTCCAATCTGCTTATTATGTTAGATACAACGGCGGTGCTAATATGCTCAGTAATGGGTATAACAAAGGAACTGGATTAGGCGCTGAAATCATCGGTACTTTTGTTCTTGTTTACACTGTTTTCTCTGCTACTGATCCCAAGAGAAACGCCAGAGATTCTCATGTTCCTGTTTTGGCTCCACTCCCAATTGGGTTTGCTGTGTTCATGGTTCATTTGGCTACAATCCCCATCACTGGAACTGGAATTAACCCTGCAAGAAGTTTTGGAGCTGCTGTCATCTTCAACAAAGAGAAAGCCTGGGATGACCAATGGATTTTCTGGGTTGGACCATTTATTGGAGCTGCAATTGCTGCAATTTACCATCAGTATGTGCTCAGAGCTGGAGCTATTAAAGCTCTTGGATCTTTCAGGAGCAATGCTTGA 936 48.29 MFREKEGGDHFPNSVKQKTKHTITPSRAVGGGRVEQGEFQSKDYQDPPPAPLIDPEELTKWSLYRAAIAEFIATLLFLYVTVLTVIGYSHQSDPSVSTDPCNGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCAGAICGCGLVRAFQSAYYVRYNGGANMLSNGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAGAIKALGSFRSNA 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35637260 35640062 - ClCG02G021150.2 Cla02g02062 268188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02062 311 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 35 311 IPR034294 -
Cla02g02062 311 SUPERFAMILY Aquaporin-like 56 297 IPR023271 -
Cla02g02062 311 TIGRFAM MIP: MIP family channel proteins 69 291 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g02062 311 CDD MIP 65 295 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g02062 311 ProSitePatterns MIP family signature. 131 139 IPR022357 -
Cla02g02062 311 MobiDBLite consensus disorder prediction 1 16 - -
Cla02g02062 311 PANTHER AQUAPORIN PIP2-4-RELATED 35 311 - -
Cla02g02062 311 Pfam Major intrinsic protein 57 292 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g02062 311 PRINTS Major intrinsic protein family signature 150 169 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g02062 311 PRINTS Major intrinsic protein family signature 199 217 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g02062 311 PRINTS Major intrinsic protein family signature 65 84 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g02062 311 PRINTS Major intrinsic protein family signature 235 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g02062 311 PRINTS Major intrinsic protein family signature 275 295 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g02062 311 PRINTS Major intrinsic protein family signature 113 137 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g02062 311 Gene3D Glycerol uptake facilitator protein. 50 311 IPR023271 -
Cla02g02062 311 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01174 Cla-Chr2:25220123 Cla02g02062 Cla-Chr2:35637260 4.62E-140 dispersed
Cla02g02062 Cla-Chr2:35637260 Cla04g00884 Cla-Chr4:23832679 4.73E-136 dispersed
Cla10g01892 Cla-Chr10:34818950 Cla02g02062 Cla-Chr2:35637260 1.31E-34 dispersed
Cla04g00532 Cla-Chr4:18897371 Cla02g02062 Cla-Chr2:35637260 1.39E-13 transposed
Cla06g00512 Cla-Chr6:6189219 Cla02g02062 Cla-Chr2:35637260 4.22E-19 transposed
Cla10g01933 Cla-Chr10:35173230 Cla02g02062 Cla-Chr2:35637260 5.73E-131 wgd
Cla02g02062 Cla-Chr2:35637260 Cla04g00881 Cla-Chr4:23808256 3.53E-139 wgd
Cla02g02062 Cla-Chr2:35637260 Cla05g02143 Cla-Chr5:33021643 6.97E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02062 K09872 - csv:101215300 532.717