Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02065 ATGGCCATGGCTATAGCTCATCATAGAGAGAGCAGTAGTGGGAGTATAACCAGGCATCTTGATAGTTCTGGGAAGTACGTTCGATACACTGCAGAGCAGGTGGAGGCTCTTGAGCGAGTCTATGCTGAGTGCCCCAAGCCAAGTTCTCTTCGACGCCAGCAGCTTGTTCGGGAGTGCCCAATTCTTTCCAACATAGAACCCAAGCAGATCAAAGTTTGGTTTCAGAATCGCAGATGTAGGGAGAAGCAAAGGAAGGAGGCTTCTCGGCTGCAAACAGTGAACAGAAAATTGAATGCTATGAACAAGTTGTTAATGGAGGAGAATGATCGACTGCAGAAGCAAGTTTCGCAATTGGTGTGTGAAAATGGGTTTATGAGGCAGCAATTGCAAACAGTGCCAGCAGCAGCAACTACTGATGCAAGCTGTGATTCTGTGGTCACCACTCCTCAACCCTCTCGACGTGATGCTAATAACCCAGCTGGACTCCTCTCCATTGCAGAGGAGACCTTAGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATCTTTGCCATTTCACAAAGTTGTGGTGGAGTGGCAGCAAGAGCCTGTGGTCTTGTAAGTTTGGAGCCTTCGAAGATTGCAGAGATCCTTAAAGATCGTCCATCGTGGTTTCGTGATTGTCGAAGCCTTGAGGTTTTTACCATGTTTCCAGCTGGAAATGGTGGGACAATTGAACTTGTTTACACACAGGTATATGCTCCAACTACCCTTGCTCCTGCACGTGATTTTTGGACGCTAAGATATACGATAACCTTAGAAAATGGCAGCCTTGTGGTTTGCGAGAGATCGCTCTCTGGTTCTGGTGCCGGTCCTAGTGCAGCTGCTGCTGCTCAGTTTGTGAGAGCTGAGATGCTCCCAAGTGGATATCTGATTCGACCATGTGAGGGTGGTGGGTCCATTATACATATTGTTGATCACCTAAATCTTGAGGCATGGAATGTTCCTGAGGTGTTGCGACCACTTTATGAATCATCAAAAGTAGTGGCTCAGAAGATGACAATAGCAGCACTGCGGTACGTTAGGCAAATAGCCCAGGAGACAAGTGGTGAAGTGGTTTATGGTCTTGGCCGGCAACCTGCTGTTTTGCGGACCTTTAGCCAAAGATTGAGCAGGGGTTTTAATGATGCAGTGAATGGATTTAATGACAATGGATGGTCGTTGATTAATTGTGAAGGTGCTGAGGATGTGGTACTCACTGTGAATTCTACGAAAAATTTTGGCACAACATCGAACCCTGCTAACTCCTTGACATATCCTGGGGGAGTTCTTTGTGCAAAGGCATCCATGCTACTCCAAAATGTTCCTCCTGCTGTGTTAGTTCGTTTCTTGAGAGAACACCGCTCAGAGTGGGCTGATTTCAACATTGATGCATACTCTGCAGCAACCCTTAAGGCCAATTCATATGCATATCCAGGGATGAGACCCACAAGGTTTACTGGTAGCCAAATCATCATGCCACTCGGTCACACAATCGAGCACGAAGAGTTGCTTGAAGTAATTAGACTTGAAGGACATCCTATGGTACAAGAAGATGCTTTTGTTTCGAGAGACATTCATCTTCTTCAGATATGTAGTGGAATTGACGAGAATGCTGTAGGGGCCTGTTCAGAACTCATTTTTGCTCCTATTGATGAGATGTTTCCAGACGATGCTCCATTGCTGCCTTCTGGCTTTCGAATCATCCCATTGGATTCCAGAACAGTTGAGTATAATTGTTTCGTATGGATTTGTTGTAGTTTTCCATACTCAATCAGCGGCAAAATTCTTGATGTGAATATTATAATCTTGGCTAGTGATGCAAAAGGTAGTCAACGGACTCTGGATCTAACATCGAGTCTTGAAGTGGGTTCTGGAACAAGCAATACTGCTGGAGATGCATCATCAAGTCAGAGTGCTAGATCGGTGTTAACCATAGCATTTCAGTTTCCTTTTGAAAGCAGCATGCAGGATAATGTTGCGAACATGGCACACCAGTACGTACGTAGCGTCATTTCCTCGGTACAGAGAGTTGCGATGGCCATATCTCCATCTGGAGGCAGTCCAGCGCTTGGTCCAAAGCTGTCTCCTGGTTCTCCAGAAGCTCTTACTCTAGCACATTGGATATGCAAGAGCTATAGTTTACAATTGGGAACGGAGTTGATCAAATCAGATTCCTTGGAAAGTGATTCCCTTTTGAAAAATCTCTGGAATCATCAGGATGCAATATTGTGCTGTTCGCTGAAGCAGTCACTGCCTGTTTTTCTGTTTGCAAACCAAGCTGGGCTTGACATGTTGGAGACAACTCTAGTGGCCTTACAAGACATCACGTTGGATAAGATATTTGACGAGTCGGGTCGCAAAGCCTTGTGTGCTGATTTCCCAAAGTTAATGCAGCAGGGATTCGCGTACTTGCCAGGAGGAATCTGTGCATCAACAATGGGACGACACGTTTCATACGAACAAGCCGTTGCATGGAAAGTCCTCGAGGCAGACGAGTCGACAGTCCATTGCCTTGCCTTCTCATTCATAAACTGGTCTTTTGTTTGA 2619 45.97 MAMAIAHHRESSSGSITRHLDSSGKYVRYTAEQVEALERVYAECPKPSSLRRQQLVRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLQTVPAAATTDASCDSVVTTPQPSRRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLEPSKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTITLENGSLVVCERSLSGSGAGPSAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKVVAQKMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDNGWSLINCEGAEDVVLTVNSTKNFGTTSNPANSLTYPGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFNIDAYSAATLKANSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHPMVQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSRTVEYNCFVWICCSFPYSISGKILDVNIIILASDAKGSQRTLDLTSSLEVGSGTSNTAGDASSSQSARSVLTIAFQFPFESSMQDNVANMAHQYVRSVISSVQRVAMAISPSGGSPALGPKLSPGSPEALTLAHWICKSYSLQLGTELIKSDSLESDSLLKNLWNHQDAILCCSLKQSLPVFLFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFPKLMQQGFAYLPGGICASTMGRHVSYEQAVAWKVLEADESTVHCLAFSFINWSFV 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35684957 35690557 + ClCG02G021180.2 Cla02g02065 268191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02065 872 SUPERFAMILY Homeodomain-like 22 87 IPR009057 -
Cla02g02065 872 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 872 IPR044830 GO:0003700
Cla02g02065 872 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 872 - -
Cla02g02065 872 ProSiteProfiles START domain profile. 155 383 IPR002913 GO:0008289
Cla02g02065 872 Gene3D - 201 379 IPR023393 -
Cla02g02065 872 Gene3D - 19 91 - -
Cla02g02065 872 CDD START_ArGLABRA2_like 159 375 - -
Cla02g02065 872 Pfam START domain 165 373 IPR002913 GO:0008289
Cla02g02065 872 SMART START_1 164 374 IPR002913 GO:0008289
Cla02g02065 872 CDD bZIP 77 116 - -
Cla02g02065 872 Pfam Homeodomain 25 83 IPR001356 GO:0003677
Cla02g02065 872 Pfam MEKHLA domain 727 871 IPR013978 -
Cla02g02065 872 SUPERFAMILY Bet v1-like 164 376 - -
Cla02g02065 872 CDD homeodomain 25 85 IPR001356 GO:0003677
Cla02g02065 872 Coils Coil 80 121 - -
Cla02g02065 872 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
Cla02g02065 872 SMART HOX_1 22 88 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01351 Cla-Chr1:27076751 Cla02g02065 Cla-Chr2:35684957 0 dispersed
Cla02g02065 Cla-Chr2:35684957 Cla03g00588 Cla-Chr3:6693553 0 dispersed
Cla02g02065 Cla-Chr2:35684957 Cla01g02453 Cla-Chr1:38229879 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60729 PF01852 START 4.40E-46 CL0209 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02065 K09338 - csv:101215773 1615.9