Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02072 ATGCGCTTCAACCAAACTCCCTTTGTCAAGAAATCGTGTCCTCTTCTTCCTCACTTCTCGCTTTGTTTCTCTAACAGCTTCTACTTGGTGGGTACTGGGTATTATGGTTACCACAGGACAAGTAACATTCTCGAGCCGCGCAATCTGAGACAGAGTATTATTTTACTGGTCCCTTTCGGATTCGCAAATGGGTCACTTTCAGAGTGGTGGTCGATGGGCTCTGTTCTGTTCTGTTTTCAGCCTGATTCCAATTCTGAATATATCCGAACCTTTAGCGGTCTCTGTCCACCACAATTCCCTTTCTGTCATTCGGCGTTCTCAATCCACTGTTTTGATTATCTGGATAAAATGAAGCACCAAGTGGCAACCACCTTCATTTCTTTAATGATTTTTATCTTGATGCAACAAGTCATTTGTGCTGATACTTCTGATACTTCTACCCCTGGCAACTGGACGTGTAAATGTTTTTCTCCATACCAAGAAAAACAGAGATTAACACTTGGGGTAAATTGTTCTACATCGTGTTCATGTTCACAAGATGTTGGGGGAATCGGACTGTGGACATGCATCTGTTCAACTGATGGCTTCCCAAAAGTTGTAGCCGAACACCGTGATTCTAACTGTTTTACGTCATGCAACTGTTCTTATGGACTGCTTCCGGAGTCACCATCTTCTAAAAGGCACATTTCAAGCAACGTGGTTGTGATTATTCTCTCACTATGTGTAATAATCATAACATTAGCCTTCTTCATCTTAGTGGTTTGCTATCTTTGTCAAAGGGGCAAGTACCGTGTTCGAACTCCAATATTTTCATTAGATAAGCAAATGAGCTACAACAGTTTGACCAACCTAATTAGTCACAAGAGTTCTTCAACACTGGATAGTAAGGTTATGATGGATTCCCCTGTGAATAACATCAAAGGATGCTTTTTCATGAATCAATGCTTGTTGAGGACTAAATCTTGGAGTATGTGTGGGATCATCATCCAATTCTCATATTCAGAGTTGGAAAATGCAACAAATAAGTTTTCAAGCTCCCATCTTGTGGGACGTGGGGGAAGTAGCTTTGTTTATCGTGGTGAATTGAAGGACGGTAGAACAGTGGCTGTAAAGCGGCTCAATATTCAAGGAGGACTGGATGTGGACTACTTATTCTTAACAGAAATACAATTGTTATCAAGACTTCATCATTGCCACGTGGTTCCTCTACTTGGTTATTGCACAGAATCAAGGGGGAAACATACTGAAAGGCTTTTGGTATATGAATACATGCCAAAGGGTAATCTAAGAGACTGTTTGGATGAAGCTTCAGAGGAGAAAATGGATTGGGGTACTCGTGTTACAATTGCTTTGGGAGCTGCAAGAGGCTTGGAGTATCTTCATGAAGCAGCTGCTCCCAGAATTTTGCATAGAGATGTCAAGTCAACAAATATTCTTTTGGATAAAGATTGGAGAGCAAAAATAACAGACCTTGGTATGGCTACAAGGTTAAGAGGTGATGATCATCCTAGCTGTTCCAGTTCTCCTGCTAGAATGCAGGGGACTTTTGGGTACTTTGCACCGGAGTATGCAATTGTTGGAAGAGCCTCTTTGAAGTCTGATGTCTTTAGTTTTGGAGTTGTTCTTCTTGAGCTTATAACGGGTCAGCATCCCATCCATAAATCAGCAAGCAAAGGGGAGGAAAGCCTTGCAATATGGGCTGCTCCCCGGTTGCAAAATAGTAGGCTAGTCATAACAGAGTTGCCCGACCCAAATTTAGATGGAATGTTCCCGGAGGAAGAGATGCAAATAATGGCTTATTTAGCAAAGGAGTGCTTGCTGTTGGATCCTGATGCTAGACCTACCATGACTGAAGTTGTTCAAGTTCTTTCAAATATAACTCCAGATAAATCAAGAAGGAATAACATTTCTGCAAATGTTTTTCAGGAGAGGCTGTCAGCCTGTAGTGTGGAGAGTGAACCAGACATGGTAAATGACAACATGAATCCTATAGGAAAACAAGTCCATACAGAGGTGATTCCCATTGATGATGTGATGGCAAGGCAAGCTTCATCCCGCAAATGGCTTGATCGCTATTCACTACCATTGGATATTGATCGTTCACTTTGTACTGGCAACTATGACAACCAAGATATTGTTTCTTTTGAGCACATGGAAAGACGTGTACGCTTGGCTTTAAAGGGCCGCAATCTCCAAGTCCAAGCCCCAGATGATGAAACAGTAGACTTGACTGAGCCTCGGTTCGAGTCATTCTGCATCGTGAATGTCAGATCATCTTCATAG 2283 42.01 MRFNQTPFVKKSCPLLPHFSLCFSNSFYLVGTGYYGYHRTSNILEPRNLRQSIILLVPFGFANGSLSEWWSMGSVLFCFQPDSNSEYIRTFSGLCPPQFPFCHSAFSIHCFDYLDKMKHQVATTFISLMIFILMQQVICADTSDTSTPGNWTCKCFSPYQEKQRLTLGVNCSTSCSCSQDVGGIGLWTCICSTDGFPKVVAEHRDSNCFTSCNCSYGLLPESPSSKRHISSNVVVIILSLCVIIITLAFFILVVCYLCQRGKYRVRTPIFSLDKQMSYNSLTNLISHKSSSTLDSKVMMDSPVNNIKGCFFMNQCLLRTKSWSMCGIIIQFSYSELENATNKFSSSHLVGRGGSSFVYRGELKDGRTVAVKRLNIQGGLDVDYLFLTEIQLLSRLHHCHVVPLLGYCTESRGKHTERLLVYEYMPKGNLRDCLDEASEEKMDWGTRVTIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKDWRAKITDLGMATRLRGDDHPSCSSSPARMQGTFGYFAPEYAIVGRASLKSDVFSFGVVLLELITGQHPIHKSASKGEESLAIWAAPRLQNSRLVITELPDPNLDGMFPEEEMQIMAYLAKECLLLDPDARPTMTEVVQVLSNITPDKSRRNNISANVFQERLSACSVESEPDMVNDNMNPIGKQVHTEVIPIDDVMARQASSRKWLDRYSLPLDIDRSLCTGNYDNQDIVSFEHMERRVRLALKGRNLQVQAPDDETVDLTEPRFESFCIVNVRSSS 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35796154 35803461 - ClCG02G021270.2 Cla02g02072 268198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02072 760 SUPERFAMILY Protein kinase-like (PK-like) 323 623 IPR011009 -
Cla02g02072 760 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524
Cla02g02072 760 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE NCRK ISOFORM X1 117 759 - -
Cla02g02072 760 PANTHER OS01G0750732 PROTEIN 117 759 - -
Cla02g02072 760 SMART serkin_6 343 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g02072 760 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Cla02g02072 760 Gene3D Phosphorylase Kinase; domain 1 318 423 - -
Cla02g02072 760 ProSiteProfiles Protein kinase domain profile. 343 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g02072 760 CDD STKc_IRAK 349 626 - -
Cla02g02072 760 Pfam Protein kinase domain 345 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g02072 760 Gene3D Transferase(Phosphotransferase) domain 1 424 649 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02072 Cla-Chr2:35796154 Cla02g01354 Cla-Chr2:27804754 2.65E-72 dispersed
Cla02g02072 Cla-Chr2:35796154 Cla03g01496 Cla-Chr3:30528622 2.59E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80383 PF00069 Pkinase 1.40E-43 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02072 - - csv:101217673 1153.27