Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02101 ATGCTTTCACTGCGTTCATGTTACTATCTACGCCCCATCACATTGCCTCATCCCCAATTCAAGAAACTCATCTTCTCCATCAAACCTCCCTCTTTCAAACCCATTTTTCAGAATTTTGTTTCACCAATGTCTTCTCGTCCTTCCGCGTTCGATGCTCTCATGTCTGGTGCTCGGGCCGCTGCCAAGAAAAAGCCTGTTAATTCTTCTCCCAAGAAGCGTAAAGCCCTTGATTCTTTAGACCCTCCTCCGAAACCTAGCTCTTCCCTTGCTCTGGAGTCAACGCCGGCCGTTGAATCGCAGTGCGGCAGTTCAATTGCAAATTTGGACAATCATGGAGGTACTCATCTGGTAAAGTCCGAGGACGCTGCTGATTTGGAGGAAACCAAGTTGCGTCAGGATAATGGTGGCAGTGTTGGACCCAAGAATGGGCCGTTTGCGAACAAGACGTGTGCGTCTAGTGTTCAAGAAAGAACTGCGAAATTGAAGAGCTCTATTCCAGAGTTGAAAAAGAAGGCCAAGGATTTCAACTCGAAGAATGTTGCATGTTGGAAAGAGGGCGAACGGGTTCCATTTTTGTTTCTGTGTTTGGGTTTCGATATGATTTCGGAGGAGTCTAGTAGGATTACTATCACCGATATAGTCTGCAACATGCTGAGGACCGTCATGGATACTACACCCGACGACTTGGTAGCCACTGTGTATCTTTTGGCGAATAAGATTGCTCCAGCACACGAAGGGCTTGAGTTGGGGATTGGGGATGCTTCTATTATCAAAGCTCTTTCTGAGGCATTTGGGAGGACAGAGGCACAGGTCAAAAAACAGTACAAGGAATTGGGAGATTTAGGTCTTGTTGCTAAAGCGAGCCGTTCATCTCAGTCTATGATGCGAAAGCCCGATGCTTTAACTATTACCAAAGTATTTGACATATTTCGGCTGATTGCTAAGGAATCTGGCAAGGATAGTCAGGAGAAGAAAAAGAACCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGTGAACCTTTATATCTGATTAGATTGCTGCAGACAAAATTGCGAATTGGACTTGCTGAGCAGACTCTTTTAGCTGCATTAGGACAAGCAGCTGTATATGCTGAAAAACACTCAACTCCACCACCAAATATTCAATCTCCTCTAGAAGAGGTCCTAACGTTATGTTTGCATCAGGCTTCTAAGATTGTAAAGCAGGTGTATTCTATACTCCCAGTTTATGATAAACTTGTCCCTGCTCTTCTTAGTGGTGGTGTGTGGAATCTTTCAAAAACATGCAACTTTACACCAGGAATTCCAATTGGACCTATGCTGGCAAAACCAACGAAAGGAGTGTCTGAAATCTTAAATAAATTCCAGGGTATGGAATTTACTTGTGAATACAAATATGATGGGGAACGTGCCCAGATACATTACATGGAAGATGGTTCAGTTGAGATATACAGTCGAAATGCTGAACGGAACACTGGAAAGTTCCCTGACGTTGTTCTCACGGTAGCAAGGATAAAGAAACCATCTGTAAGATCATTTATTTTGGATTGTGAACTTGTTGCTTACGATCGTGGAAAACAAAAGATTCTGCCTTTTCAGATTCTAAGTACTCGAGCTCGTAAGAATGTGGCCCTGAGTGATATTAAGGTTGAAGTGTGTGTCTTTGCTTTTGATTTACTGTATCTTGATGGCCAACCACTTATCCAGAGAGAACTGAATGTTCGCCGAGAGCTTCTCTACGATTCATTTATTGAAGAACCTGGATATTTTCAATTTGCCACAGCAATAATAACAAATGATCTTGAGGAAATACAAAAGTTCCTTGATGCATCGGTTGATCAAAGGTGTGTTCCCTTTTCCTGGTTGGCTGGTCTACTAGGAGGGTTGAAGCTGTTCTCTGATAGCTCTCCTAGTGCTGATGAATTCGAGAGTGTTGTGGCACTATCACAAGATTGCTCATTGTGGTTATGTACTTATGTATCGGTTAATAAGTGGGGGTTGCTCCAGTGCTGTGAGGGTTTAATCATCAAAACACTGAACCGCGATGCTACTTATGAGCCTTCCAAGAGGTCCCTTAACTGGCTAAAACTGAAGAAGGATTACATAGACAACATAGGGGATTCACTTGATCTGGTACCAATTGCTGCTTTCCATGGTCGTGGGAAACGTACAGGTGTCTATGGTGCATTTCTCCTTGCCTGTTATGATAATGACAATGAAGAATTTCAAAGCATTTGTAAGATAGGAACTGGGTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATTCCTGAACCAAAGTCATATTATCGGTATGGAGATACAATCAATCCAGATGTTTGGTTTGAGCCTACTGAGGTATTTGTTGCACCCTCTCCCTCTTTGCAAAAAGAGAAGTCTGAAAATAACATGGAAAGAACCAAGAAGGTTTGGGAGGTTAAAGCAGCAGATTTGACTATTAGCCCAGTTCATCGTGCAGGAGTTGGCATTGTGGATTCAGTCAAGGGAATTTCTCTCCGATTTCCACGTCTTGTTCGTGTGAGGAAAGACAAAAATCCTGAGGAAGCCTCATCATCTGAGCAGGTTGCCGACATGTATAATGCTCAGAAACACAACCACCAAAACAATCAAGATGACAATGAAGACGACTAA 2673 42.99 MLSLRSCYYLRPITLPHPQFKKLIFSIKPPSFKPIFQNFVSPMSSRPSAFDALMSGARAAAKKKPVNSSPKKRKALDSLDPPPKPSSSLALESTPAVESQCGSSIANLDNHGGTHLVKSEDAADLEETKLRQDNGGSVGPKNGPFANKTCASSVQERTAKLKSSIPELKKKAKDFNSKNVACWKEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTITKVFDIFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYAEKHSTPPPNIQSPLEEVLTLCLHQASKIVKQVYSILPVYDKLVPALLSGGVWNLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGMEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVARIKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVALSDIKVEVCVFAFDLLYLDGQPLIQRELNVRRELLYDSFIEEPGYFQFATAIITNDLEEIQKFLDASVDQRCVPFSWLAGLLGGLKLFSDSSPSADEFESVVALSQDCSLWLCTYVSVNKWGLLQCCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVWFEPTEVFVAPSPSLQKEKSENNMERTKKVWEVKAADLTISPVHRAGVGIVDSVKGISLRFPRLVRVRKDKNPEEASSSEQVADMYNAQKHNHQNNQDDNEDD 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36043684 36054404 - ClCG02G021550.2 Cla02g02101 268227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02101 890 Gene3D - 705 889 IPR012340 -
Cla02g02101 890 ProSiteProfiles ATP-dependent DNA ligase family profile. 546 737 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Cla02g02101 890 MobiDBLite consensus disorder prediction 60 93 - -
Cla02g02101 890 Pfam DNA ligase N terminus 190 365 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cla02g02101 890 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 435 616 - -
Cla02g02101 890 Pfam ATP dependent DNA ligase C terminal region 724 858 IPR012309 GO:0003910|GO:0006281|GO:0006310
Cla02g02101 890 Gene3D - 167 442 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cla02g02101 890 PANTHER DNA LIGASE 1 814 890 - -
Cla02g02101 890 PANTHER DNA LIGASE 1 671 795 - -
Cla02g02101 890 PANTHER DNA LIGASE 1 48 617 - -
Cla02g02101 890 Gene3D - 450 617 - -
Cla02g02101 890 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 671 705 - -
Cla02g02101 890 MobiDBLite consensus disorder prediction 856 890 - -
Cla02g02101 890 MobiDBLite consensus disorder prediction 865 880 - -
Cla02g02101 890 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 464 472 IPR016059 GO:0003909
Cla02g02101 890 Gene3D - 667 704 - -
Cla02g02101 890 ProSitePatterns ATP-dependent DNA ligase signature 2. 673 699 IPR016059 GO:0003909
Cla02g02101 890 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 248 617 IPR000977 GO:0003910|GO:0005524|GO:0071897
Cla02g02101 890 Gene3D DNA ligase/mRNA capping enzyme 469 594 - -
Cla02g02101 890 Pfam ATP dependent DNA ligase domain 440 617 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Cla02g02101 890 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 172 431 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cla02g02101 890 SUPERFAMILY Nucleic acid-binding proteins 707 876 IPR012340 -
Cla02g02101 890 CDD Adenylation_DNA_ligase_I_Euk 429 702 - -
Cla02g02101 890 CDD OBF_DNA_ligase_I 707 875 - -
Cla02g02101 890 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 814 890 - -
Cla02g02101 890 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 48 617 - -
Cla02g02101 890 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 671 795 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02101 Cla-Chr2:36043684 Cla07g01571 Cla-Chr7:32905964 5.82E-79 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02101 K10747 - csv:101213447 1388.24