Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02106 ATGGAGCAAATTGGGAGGCATTTAATGACGAACATAAGCGATCAATTTGAGCTCCAAGATTTCATCCATGGCGACAACTTGGATCAATATGTGAATCTGATTCGTGGAGGGAACGAAAATTCGATATTCAATAACTTCGATCTTGATTTCATGAACGGTTGCTTGGTGGAGAATCGTTTGGATCCAAGCCCTGAATTCATTGTAGATTCGAATATGTTGATGAATAATTCTGATCCCAATTCTCTGTTTAGTACATTGGAGAGTTTCAATGGCATCATGAAAGAAGTTGAAAATGAAGATGAAGATGAAGATGACACTTCTGTAGAGAATTCTTCTTTCACAACCTCAAAGAAACCTAAGGTCGATCGATCAAGAACTTTGATTTCTGAACGAAGGAGAAGAGGAAGAATGAAGGAAAAGCTTTATGCATTGCGTTCATTGGTTCCAAATATAACCAAGATGGACAAGGCTTCTATTGTTGGGGATGCAGTCTTATATGTGAAAGAGCTACAAATGCAAGCCAAGAAGCTCAAATCAGAGATATCAGTTTTGGAATCTTCAATCAACCAAACACAAATTATTGATAAAGATCAAAACCAAAAGAAGATTATTCAAACTTCACATCCTGACCAATTCCTCCCCATCAAAATAATTCAGCTGGATGTGTTTCAAGTGGAGGAAAGAGGATTTTATTTGAGGTTAGTTTGCAAGATGGGTGAAAGAGTAGCTATGTCTCTTTACAAAGTTCTTGAATCTCTCACCAACTTCGTTATTCAAAGCTCTAACTTGGCCTCTGCTTCAGATAGATTCATTCTCACCGCTACAATTAATGTGCGAGATTGTGAGGTGGACATGAACTTGCCAAATTTGAAGCTTTGGTTAACTGGGGCACTTCTTAACCATGGATTTGAGTTTTAA 918 37.69 MEQIGRHLMTNISDQFELQDFIHGDNLDQYVNLIRGGNENSIFNNFDLDFMNGCLVENRLDPSPEFIVDSNMLMNNSDPNSLFSTLESFNGIMKEVENEDEDEDDTSVENSSFTTSKKPKVDRSRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLYVKELQMQAKKLKSEISVLESSINQTQIIDKDQNQKKIIQTSHPDQFLPIKIIQLDVFQVEERGFYLRLVCKMGERVAMSLYKVLESLTNFVIQSSNLASASDRFILTATINVRDCEVDMNLPNLKLWLTGALLNHGFEF 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36080981 36082999 + ClCG02G021600.2 Cla02g02106 268232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02106 305 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 170 IPR011598 GO:0046983
Cla02g02106 305 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 77 304 - -
Cla02g02106 305 Gene3D - 119 197 IPR036638 GO:0046983
Cla02g02106 305 MobiDBLite consensus disorder prediction 97 125 - -
Cla02g02106 305 Pfam Helix-loop-helix DNA-binding domain 126 171 IPR011598 GO:0046983
Cla02g02106 305 SMART finulus 127 176 IPR011598 GO:0046983
Cla02g02106 305 Coils Coil 167 187 - -
Cla02g02106 305 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 189 IPR036638 GO:0046983
Cla02g02106 305 PANTHER TRANSCRIPTION FACTOR FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR 77 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02106 Cla-Chr2:36080981 Cla06g01360 Cla-Chr6:27100692 1.77E-19 dispersed
Cla02g02106 Cla-Chr2:36080981 Cla11g01141 Cla-Chr11:23611726 6.33E-21 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60733 PF00010 HLH 2.50E-09 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02106 - - csv:101213681 491.5