Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla02g02106 | ATGGAGCAAATTGGGAGGCATTTAATGACGAACATAAGCGATCAATTTGAGCTCCAAGATTTCATCCATGGCGACAACTTGGATCAATATGTGAATCTGATTCGTGGAGGGAACGAAAATTCGATATTCAATAACTTCGATCTTGATTTCATGAACGGTTGCTTGGTGGAGAATCGTTTGGATCCAAGCCCTGAATTCATTGTAGATTCGAATATGTTGATGAATAATTCTGATCCCAATTCTCTGTTTAGTACATTGGAGAGTTTCAATGGCATCATGAAAGAAGTTGAAAATGAAGATGAAGATGAAGATGACACTTCTGTAGAGAATTCTTCTTTCACAACCTCAAAGAAACCTAAGGTCGATCGATCAAGAACTTTGATTTCTGAACGAAGGAGAAGAGGAAGAATGAAGGAAAAGCTTTATGCATTGCGTTCATTGGTTCCAAATATAACCAAGATGGACAAGGCTTCTATTGTTGGGGATGCAGTCTTATATGTGAAAGAGCTACAAATGCAAGCCAAGAAGCTCAAATCAGAGATATCAGTTTTGGAATCTTCAATCAACCAAACACAAATTATTGATAAAGATCAAAACCAAAAGAAGATTATTCAAACTTCACATCCTGACCAATTCCTCCCCATCAAAATAATTCAGCTGGATGTGTTTCAAGTGGAGGAAAGAGGATTTTATTTGAGGTTAGTTTGCAAGATGGGTGAAAGAGTAGCTATGTCTCTTTACAAAGTTCTTGAATCTCTCACCAACTTCGTTATTCAAAGCTCTAACTTGGCCTCTGCTTCAGATAGATTCATTCTCACCGCTACAATTAATGTGCGAGATTGTGAGGTGGACATGAACTTGCCAAATTTGAAGCTTTGGTTAACTGGGGCACTTCTTAACCATGGATTTGAGTTTTAA | 918 | 37.69 | MEQIGRHLMTNISDQFELQDFIHGDNLDQYVNLIRGGNENSIFNNFDLDFMNGCLVENRLDPSPEFIVDSNMLMNNSDPNSLFSTLESFNGIMKEVENEDEDEDDTSVENSSFTTSKKPKVDRSRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLYVKELQMQAKKLKSEISVLESSINQTQIIDKDQNQKKIIQTSHPDQFLPIKIIQLDVFQVEERGFYLRLVCKMGERVAMSLYKVLESLTNFVIQSSNLASASDRFILTATINVRDCEVDMNLPNLKLWLTGALLNHGFEF | 305 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 36080981 | 36082999 | + | ClCG02G021600.2 | Cla02g02106 | 268232 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla02g02106 | 305 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 121 | 170 | IPR011598 | GO:0046983 | |
Cla02g02106 | 305 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 77 | 304 | - | - | |
Cla02g02106 | 305 | Gene3D | - | 119 | 197 | IPR036638 | GO:0046983 | |
Cla02g02106 | 305 | MobiDBLite | consensus disorder prediction | 97 | 125 | - | - | |
Cla02g02106 | 305 | Pfam | Helix-loop-helix DNA-binding domain | 126 | 171 | IPR011598 | GO:0046983 | |
Cla02g02106 | 305 | SMART | finulus | 127 | 176 | IPR011598 | GO:0046983 | |
Cla02g02106 | 305 | Coils | Coil | 167 | 187 | - | - | |
Cla02g02106 | 305 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 122 | 189 | IPR036638 | GO:0046983 | |
Cla02g02106 | 305 | PANTHER | TRANSCRIPTION FACTOR FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR | 77 | 304 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g02106 | Cla-Chr2:36080981 | Cla06g01360 | Cla-Chr6:27100692 | 1.77E-19 | dispersed | |
Cla02g02106 | Cla-Chr2:36080981 | Cla11g01141 | Cla-Chr11:23611726 | 6.33E-21 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60733 | PF00010 | HLH | 2.50E-09 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla02g02106 | - | - | csv:101213681 | 491.5 |