Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02143 ATGAGCGGCGAAAGCCGACGGCGAGGCCGTGCAGACAAGAGTAGTAGGTCGAAGAAGCAGAGGATAATCCGGTCAGCCGAGGAGGAGATCGAATCAAAGCTTGGATTTGATCTCTTCTCTGAAGGCGATAAGAGGCTTGGATGGCTGCTCACTTTCGCTCCTTCATCTTTGGAGGATCAGGATACTGGAAAGGTCAATAGTTGTATTGATCTTTATTTTGTGACACAGGATGGAAGCAGCTTCAAGTCAAAATATAAGTTTCGTCCTTATTTCTATGCAGCCACAAAGGATAAAATGGAAATTGATGTGGAGGCGTATTTGAGACGACGTTATGAAGGTCGAATAGCTGATATTGAGATTTTAGAAAAAGAAGACCTTGATCTTAAGAATCATCTGTCAGGATTGCGCAAGGCATATTTGAAACTATCATTTGAAACTGTTCAAGAATTGATGAATGTGAAGAGTGAACTATTGCATGTTGTTGAAAGCAACTGGGCAAAGTCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGTAAAAGGGAACAAAAGCCTCAAGATTTTCTAGAATGCATTGTTGATCTTCGAGAGTATGATGTTCCGTACCATGTTCGCTTTGCTATTGATCATGATTTACGCTGTGGACAATGGTACGATGTTAGTGTATCAAGCACTGGTGTTACACTTGAGAAGAGAAAAGATCTTCTGCAACGTGCTGAAGTTCACATATGTGCATTTGATATTGAAACCACAAAGCTACCATTGAAATTCCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACAAGGGTACTTGATTATCAACAGAGAGTGTGTTGGAGAAGATATTGAGAATTTGGAGTACACACCAAAACCAGAATATGAAGGGTTCTTTAAAGTGACCAATGTGAAAAATGAGCTAGAGCTTCTCAAACTGTGGTTTTCCCATATGCGAGAGGTCAAACCTGGTATCTATGTCACCTACAATGGTGATTTTTTTGACTGGCCATTCATTGAAAGCAGAGCAGCCTATCATGGCATTAAAATGAGTGATGAAGTAGGATTTCAATGCGACAAGAATCAGGGGGAATGCCGTTCAAAATTTGCTTGTCATTTGGATTGCTTTGCCTGGGTGAAGCGTGATAGTTATCTTCCTCAAGGTAGCCATGGTTTGAAGGCTGTCACAAAAGCTAAATTGGGTTATGATCCTCTTGAAGTGAATCCCGAGGATATGGTGCGGTTTGCAAGGGAAAAGCCTCAGATGATGGCTTCCTATTCTGTTTCAGATGCTGTTGCTACATACTACTTGTACATGACCTATGTTCATCCGTTCATTTTTTCTCTAGCAACTATTATTCCAATGTCACCAGATGAGGTGTTGCGCAAGGGAAGTGGGACACTTTGTGAAATGCTTCTAATGGTTCAGGCTTACAAGGCTAATGTTGTGTGTCCTAACAAACATCAATCAGATCCAGAGAAGTTCTACAGCAACCGGCTTCTTGAAAGTGAGACATACATTGGTGGTCACGTAGAATGCCTAGAGAGTGGTGTATTTAGATCCGATCTTCCTACCAGTTTTAGGCTTGATCCATCTGCTTATGATCAATTGATATACAATTTGGATAGAGATCTGCAATATGCCATACAAGTAGAAGGAAAGATGGACTTGGAGTCAGTGTCAAATTATAGCGATGTGAAGAATGCTATCATGGAAAAGCTTATTAGATTGCGGGACGAGCCTGTACGTGAAGAGGGCCCTCTGATATATCACCTTGATGTAGCTGCGATGTATCCTAATATTATTTTAACAAATAGACTTCAGCCATCATCAATAGTTACGGACGAGGTTTGTACTGCTTGTGATTTCAATCGTCCTGGGAAAACTTGCCTACGAAAACTTGAATGGGTTTGGCGAGGAGAGGTATTCATGGCTAAAAAAAGTGACTATTATCATCTGAAGAAGCAAATTGAGTCTGAGTTTGTTGATAGCGGTAATGTTCGGTTGTCAAAATCATTTCTTGAACTTCCAAAGTTGGAGCAGCAAGCAAAGCTCAAAGAGCGCTTAAAGAAATACTGTCAGAAGGCTTATAAACGAGTACTTGATAAGCCAGTCACTGAAGTTCGAGAAGCAGGGATCTGCATGAGAGAAAACTCCTTCTATATTGACACTGTTCGTAGTTTTCGAGATAGAAGATACGAATACAAAGGGCTCAATAAAGTATGGAAGGGAAAATTATCAGAAGCTAAAGCGAGCGGAAATTCAATCAAGATCCAGGAAGCCCAAGACATGGTAGTTCTTTATGATTCTCTACAACTTGCTCATAAATGTATCCTCAACTCCTTTTATGGATATGTGATGCGAAAGGGTGCTCGATGGTATTCAATGGAAATGGCTGGGGTAGTTACATATACAGGAGCAAAAATCATTCAGAATGCTCGTCTGTTAATTGAGAAAATTGGAAAACCGCTGGAGTTAGACACCGATGGTATTTGGTGTGCTCTACCTGGATCGTTCCCAGAGAACTTTACCTTCAAAACAAGAGATTCGAAGAAGTTGACAATTTCATATCCATGCGTTATGCTTAATGTTGATGTGGCAAGGAACAACACGAATGACCAATACCAGACGCTTATAGATCCTGTGAAGAAAACATATAAAACACACAGTGAATGCTCAATTGAATTTGAAGTAGATGGACCATATAAGGCAATGATCCTTCCTGCTTCCAAGGAAGAAGGCATTTTGATCAAAAAGAGATATGCCGTCTTCAATGATGATGGAACACTTGCTGAGCTAAAAGGCTTTGAGATCAAGCGTAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGGCAGAACTTTTTGACAAGTTTCTTCATGGTTCCACCTTAGAAGAATGCTATTCAGTTGTTGCATCTGTTGCAAATCGATGGCTAGATCTTCTGGATAATCAAGGAAAAGATATTGCAGATAGCGAGTTGCTTGATTATATATCTGAATCAAGTACCATGAGCAAGTCTTTGGTAGACTATGGGGAGCAAAAGTCTTGTGCTGTTACCACTGCTAGACGTCTTGCAGATTTTCTTGGTGATACAATGGTCAGGGATAAAGGCCTACGTTGCCAATATATAGTTGCGTGTGAACCTAAGGGTACTCCTGTAAGTGAGCGTGCTGTTCCAGTTGCAATCTTTGAGACTGATGCAGAGATTATGAAATTTTATGTACGTAAATGGTGCAAGATTTCATCTGAAGTTGGCATCCGATCCATCATTGACTGGTCCTACTACAAGCAACGCTTAAGCTCAGCCATTCAAAAAATTATAACAATTCCAGCAGCCATGCAAAAGGTTGCAAATCCTGTTCCTAGGGTGGTCCATCCTGATTGGTTACATAAGAAAGTTCGTGAAAAGGATGATAAATTTCGCCAACAGAAAGTAGCTGATATGTTTGCATCCTCAAACAGAGTTAAATATTCAAAGAAGAATAGTGATGTTAGCTGCAGCAAACATGCTATGAATGAAGATAATTCTGAAGATTTAGAAGATTTTCAGAAGAAAACAAGTTCTACATATGGCCCCAAACCAGTTGTCCGATGTTATGATGTCAGAGGCATGAAACATTCACTTATGAGCGATAGTGAAATGAATTCCAAGATGCATGAAAATTTTAATGATGGAGGTGAGCCTTCTTCACCCTTGCATGTTGAAAACATAGACAAAAATGTAGATTACAGTGGATGGCTTGAAATGAAGAAGCGGAAATGGAAGGATACTTTGGACAAGAGGAAGAAGCAAAGGTTAGTGAGTTTAAGGACTCCACTTGCTGCTAATAATGTTACACGGGAGTTAAATGGTGCTATGAATAATAAAGAGTCTCCTAGAACAGGTGTTGGTTCATATTTTAAGAGGCATGAAGGATCTTTAACACGCTGCCATTGGCAGATTTTACAGCTTGTTCATAGTTCACTGAGTGGCCAATATTTTGCTTGGGCTGTTGTTGAAGGAGTTATGCTAAAGATCCCTATTAATGTTCCTAGAGTTTTTTACCTTAATTCTAAAGTACCTATTACAGATGAATTTGTGGGGAGGCGTGTTAATAAAATTCTTCCCCATGGAAGGCACAGTTATAACCTGTATGAGGTTGTGACTGATGAGGGTCAATATAGGACACAGAGGAATAAACTTGCAGCCCTACTTGCAGATCCAGAAGTAGAGGGAATCTATGAAAGCAAGGTACCATTGGAGTTCAAGTCCATCTTTCAAATTGGCTGTGTCTGTAAAGTTGATAAAACTGCTAAAAAGCGAAACATTCAAGACGGATGGAGTCTGGACGAACTGCAAATGAAGACTACAACAGAATGCAGTTATCTGGAAAAGTCAATCTCTTTCTTTTATGTGTATCATAGCATTTCTGAAGGAAGAGCTATCTACATTACCTTTTTTCCCTCCACAAGATCAATATCTGTGGTGGTGGTTAATCCTTACCAAAACAAAGACTTGTCATCAACTTTTCTTGAAAGGCAATATCGTGAAGCTTGTCAAATGCTGTCTGGTGAATCACAACCTCCTAAGAGTGGTATAACTTACAAGGTTGACTATGTTGTTAATGTCAAAGAAGCTGAAGTGATTTTGCAAAGATCGATAACAGAACACAGGAGCATAAACCATGGACCTATTCTAGCTGTAATTCAATGCCCAAACGTACTACGGCTAAAGTCAGATGTGAGAGTATTAGATGATTTTCCATGCGTGACCATTCCTTCTAATGCCCGTGATAACCAATATCAGGTTCTTGGTTGGCAACAAACAGCTGCAAAGATTGGAATGCAACGTTGTGCTGCATCATCCCAATGGTTGAATGAAAGAATCTCTCTTGCAAGATATGCCCATGTACCATTAGGAAATTTTGAACTTGATTGGCTAATTTTTACAGCAGATATATTTTTTTCAAGAGCATTACACGATCAACAGCAGGTACTTTGGATATCGGATGATGGTGTTCCAGATATAGGAGGCATTAACATAGAAGATGTGTGTTTCGCTGATGAGGTCCAACAACCTATTCTGACATATCCTGGAGCATATAGAAAAGTTTCTGTGGAGCTTAAGATCCATCATTTGGCTGTCAATGCTCTGCTGAAGAGCAACCAAGTGAATGAAATGGAAGGAGGTAGTTTGTTTGGCTTTGAACGTGATATGCAATGTGGGGCCCAACTTTCTAATGAAGAAGGTGGCTTCGATGAGGCTGCTTCATGTGCTCCGGCATTTCGTGTCCTGAAACAATTGATACAAAGGTGCCTTGCTGATGCAGTTACATCTGGAAATGTATATGCTGATGGAATTTTGCGGCATCTGTACAGATGGATTTGCAGCCCCCAGTCAAGACTTCACGATCCAGCTCTTCATCGTTTGCTCCACAAGGTTATGCAAAAGGTGTTTGCTCTTTTGTTGGCTGAGCTACGCAAATTAGGCGCCATCATTATATTTGCAAACTTCTCAAGAATTATTATAGACACGGGAAGGTTTGATCTCTCTTCTGCTAAAGCATACTGTGATAGCTTGCTGAAAACAGTGCAAACAAGGGATCTATTCGAGTGGATTGAGCTGGAACCATTACAGTTCTGGCACTCCCTGTTGTTTATGGATCAGTATAACTATGGTGGAATTCCGGCAAAAGATGATGAGAGCTCAGATATTGAATCTCAAGTTGATATAGTGGCCAACTGGAACATTGCTGAGTATCTACCCAAGAAGATTCAGGATCACTTTGTTTTTATCATCTCCCAGTTTTTGTATATTCCATGGAATTATGCAACCAAACAAGCTGCAGCAAGAGCATCCTTGCATCGTGAAGACACATGTACCCCATCCATTACTGTTGTAGCTGCTGAATCGTTTGAATCGCTGGTGACAGAAAATCTGAAAGAACAGCTAAGCTCTTACTTCAGTGACAAAATGTTGGGAATTGTTCGTGATATTGTTCTTCATATGAAAGGGAAGGACAAGAACACCAAGGATATTTTACCAGAACAACCTTCTGGTAATATCCAAAAAGGAGATGCTGCATTGGGATTCATTAAGCTCGTCTGCTCTGTTTTGGCTCTTGATCAAAATGTCCAACATGATGTTCTGGTAATGAGGAAAAATTTACTGAAGTTTGTGCGTGTTAGAGAGTTTGCACCAGAAGCTGAGTTTTCTAATTCCAGCCCGTCCATAATCTTACCCAACGTTATTTGCAGCTATTGTGACGATTGTCGAGATTTGGACTTGTGCCGCGACTCGGCTTTACTAGCACAGGAATGGCGCTGTGCTGTGCCACAATGTGGACAACCCTACGACCAAGAAGTGATGGAAAATGCTCTACTTCAAATCGTGCGGCAGAGGGAGCGCCTCTATCATGTGCAGGATCTGGTATGTGTACGCTGCAACCAAGTCAAAGCAGCTCATTTATCGGAACAGTGTGCTTGTGCTGGTACATATAAATGCAAAGAAGAAGCGACAGAATTCTTCAGCAAGATGCAGATTATTCTTAATGTAGCCACTCGTCAAAAGTTCCAACTATTGCAAGAGTTCACCTCGTGGATCTTAAAAGACTCATGA 6618 40.5 MSGESRRRGRADKSSRSKKQRIIRSAEEEIESKLGFDLFSEGDKRLGWLLTFAPSSLEDQDTGKVNSCIDLYFVTQDGSSFKSKYKFRPYFYAATKDKMEIDVEAYLRRRYEGRIADIEILEKEDLDLKNHLSGLRKAYLKLSFETVQELMNVKSELLHVVESNWAKSDAAEAYDSILFGKREQKPQDFLECIVDLREYDVPYHVRFAIDHDLRCGQWYDVSVSSTGVTLEKRKDLLQRAEVHICAFDIETTKLPLKFPDAEYDMIMMISYMVDGQGYLIINRECVGEDIENLEYTPKPEYEGFFKVTNVKNELELLKLWFSHMREVKPGIYVTYNGDFFDWPFIESRAAYHGIKMSDEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVRFAREKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVVCPNKHQSDPEKFYSNRLLESETYIGGHVECLESGVFRSDLPTSFRLDPSAYDQLIYNLDRDLQYAIQVEGKMDLESVSNYSDVKNAIMEKLIRLRDEPVREEGPLIYHLDVAAMYPNIILTNRLQPSSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEVFMAKKSDYYHLKKQIESEFVDSGNVRLSKSFLELPKLEQQAKLKERLKKYCQKAYKRVLDKPVTEVREAGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCALPGSFPENFTFKTRDSKKLTISYPCVMLNVDVARNNTNDQYQTLIDPVKKTYKTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLVDYGEQKSCAVTTARRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDAEIMKFYVRKWCKISSEVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKDDKFRQQKVADMFASSNRVKYSKKNSDVSCSKHAMNEDNSEDLEDFQKKTSSTYGPKPVVRCYDVRGMKHSLMSDSEMNSKMHENFNDGGEPSSPLHVENIDKNVDYSGWLEMKKRKWKDTLDKRKKQRLVSLRTPLAANNVTRELNGAMNNKESPRTGVGSYFKRHEGSLTRCHWQILQLVHSSLSGQYFAWAVVEGVMLKIPINVPRVFYLNSKVPITDEFVGRRVNKILPHGRHSYNLYEVVTDEGQYRTQRNKLAALLADPEVEGIYESKVPLEFKSIFQIGCVCKVDKTAKKRNIQDGWSLDELQMKTTTECSYLEKSISFFYVYHSISEGRAIYITFFPSTRSISVVVVNPYQNKDLSSTFLERQYREACQMLSGESQPPKSGITYKVDYVVNVKEAEVILQRSITEHRSINHGPILAVIQCPNVLRLKSDVRVLDDFPCVTIPSNARDNQYQVLGWQQTAAKIGMQRCAASSQWLNERISLARYAHVPLGNFELDWLIFTADIFFSRALHDQQQVLWISDDGVPDIGGINIEDVCFADEVQQPILTYPGAYRKVSVELKIHHLAVNALLKSNQVNEMEGGSLFGFERDMQCGAQLSNEEGGFDEAASCAPAFRVLKQLIQRCLADAVTSGNVYADGILRHLYRWICSPQSRLHDPALHRLLHKVMQKVFALLLAELRKLGAIIIFANFSRIIIDTGRFDLSSAKAYCDSLLKTVQTRDLFEWIELEPLQFWHSLLFMDQYNYGGIPAKDDESSDIESQVDIVANWNIAEYLPKKIQDHFVFIISQFLYIPWNYATKQAAARASLHREDTCTPSITVVAAESFESLVTENLKEQLSSYFSDKMLGIVRDIVLHMKGKDKNTKDILPEQPSGNIQKGDAALGFIKLVCSVLALDQNVQHDVLVMRKNLLKFVRVREFAPEAEFSNSSPSIILPNVICSYCDDCRDLDLCRDSALLAQEWRCAVPQCGQPYDQEVMENALLQIVRQRERLYHVQDLVCVRCNQVKAAHLSEQCACAGTYKCKEEATEFFSKMQIILNVATRQKFQLLQEFTSWILKDS 2205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36482824 36512761 + ClCG02G022050.2 Cla02g02143 268269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02143 2205 Gene3D Palm domain of DNA polymerase 753 937 IPR023211 -
Cla02g02143 2205 Pfam DNA polymerase family B 756 1070 IPR006134 GO:0000166|GO:0003677
Cla02g02143 2205 SUPERFAMILY DNA/RNA polymerases 487 1115 IPR043502 -
Cla02g02143 2205 Gene3D DNA Polymerase, chain B, domain 1 57 234 - -
Cla02g02143 2205 MobiDBLite consensus disorder prediction 1 23 - -
Cla02g02143 2205 SMART polmehr3 240 843 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cla02g02143 2205 SUPERFAMILY Ribonuclease H-like 60 468 IPR012337 -
Cla02g02143 2205 Pfam DNA polymerase family B, exonuclease domain 75 401 IPR006133 -
Cla02g02143 2205 Gene3D - 239 469 IPR036397 GO:0003676
Cla02g02143 2205 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 31 2202 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Cla02g02143 2205 CDD DNA_polB_epsilon_exo 241 445 - -
Cla02g02143 2205 CDD POLBc_epsilon 504 1122 - -
Cla02g02143 2205 SMART DUF1744_2 1510 1895 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Cla02g02143 2205 Pfam Domain of unknown function (DUF1744) 1522 1895 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Cla02g02143 2205 Gene3D - 941 1125 IPR042087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02143 Cla-Chr2:36482824 Cla09g02001 Cla-Chr9:37576109 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02143 K02324 - csv:101208568 4226.78