Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02172 ATGTCGGGTTCTCGAGCTCCTAACTCCTCTGGACACCTGCCTGAGCAGATCATGCACTCTCTTAAGCGCCAACTCCCTTTCTCTTCTATGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTTGCCCCGGACCCTCGACTTTCCGATCAAGAACCTGACGCCATCGTAGTCAAATCTCCAATGAATTATGGTGTTATCACCTTCAATTTGTGTCTTTCTGCTGTACCTAATAAAAACTTTCTAATCTTCACTGAGCGAACTACTCTTCACTGCATTGCATTCGGTCCTTTTGGTCATTGGCAATTGAAGAGGAAGAGTGAGGTAGCAGATTATGAAGCTGAGTCAATTGATAGAGCTGCCGGTCCTAGATTTACTGAGGTTGTTAACAGTCCCCATCAAACACCTGTATCTGTCAAAGGAGGAAAGGGAAGCAAATCAAGGCTTACCAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATTTTGGTCTCTTGACAAAGAAGTTCATTAATCTGATTAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTCGAGGGAATTGGTCTCATAGAAAAGAAGCTTAAAAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGGTCAGGGGATGTCGATGACAATTATGCTGGTCTACAGGCAGAAGTAGAGAACCTTACCGTGGAGGAGCGTGGAATAGACGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTACTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTTAGTCAGTTTGAAGCGAAGTTTGAGGAGATAAATGCTGTGGAAGTGCCCCCAAGCTTGCCGTCAAGTTCAGGATTGAATGAAGCACCTGCAACAACGATAGTAACAGAGGATACCAGGGGAAAGGAAGTTGAAACACGGGAGCAAGATGTACACAGAATGTGCTCCGATCTAAACGCTTCACAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCTGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGTATCACAGACATGTGGAGAACTGAACCTGGCGTTGAGTGGAATGAATTGGGTACATTTCATGAAGATTATAGTATTGGCAATGTCAGCTCACCCCAAACCCAGACTCCACTTCCCGATGATGCACCTGATATGCCTTCTACCAATCCTTCTAGCAGCTGA 1449 44.58 MSGSRAPNSSGHLPEQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDPRLSDQEPDAIVVKSPMNYGVITFNLCLSAVPNKNFLIFTERTTLHCIAFGPFGHWQLKRKSEVADYEAESIDRAAGPRFTEVVNSPHQTPVSVKGGKGSKSRLTKCSRSGPQTPMSNFGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLTVEERGIDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEAKFEEINAVEVPPSLPSSSGLNEAPATTIVTEDTRGKEVETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPGVEWNELGTFHEDYSIGNVSSPQTQTPLPDDAPDMPSTNPSSS 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36787330 36794898 - ClCG02G022380.2 Cla02g02172 268298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02172 482 SUPERFAMILY Winged helix DNA-binding domain 163 223 IPR036390 -
Cla02g02172 482 MobiDBLite consensus disorder prediction 454 482 - -
Cla02g02172 482 SUPERFAMILY E2F-DP heterodimerization region 237 342 IPR037241 -
Cla02g02172 482 Coils Coil 245 272 - -
Cla02g02172 482 MobiDBLite consensus disorder prediction 133 157 - -
Cla02g02172 482 Gene3D - 161 227 IPR036388 -
Cla02g02172 482 SMART E2F_TDP_2 160 225 IPR003316 GO:0005667|GO:0006355
Cla02g02172 482 CDD E2F_DD 236 342 IPR032198 GO:0046983
Cla02g02172 482 PANTHER TRANSCRIPTION FACTOR E2FB 18 472 - -
Cla02g02172 482 Gene3D - 232 342 - -
Cla02g02172 482 PANTHER TRANSCRIPTION FACTOR E2F 18 472 IPR015633 GO:0000978|GO:0006357
Cla02g02172 482 Coils Coil 176 196 - -
Cla02g02172 482 Pfam E2F/DP family winged-helix DNA-binding domain 166 225 IPR003316 GO:0005667|GO:0006355
Cla02g02172 482 Pfam E2F transcription factor CC-MB domain 241 341 IPR032198 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02172 K06620 E2F3; transcription factor E2F3 - csv:101219318 818.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02172 Cla-Chr2:36787330 Cla08g01431 Cla-Chr8:27149914 4.29E-70 dispersed
Cla02g02172 Cla-Chr2:36787330 Cla04g01021 Cla-Chr4:25311946 4.84E-160 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1278 . . Bda02g00683 Bda09g01394 Bpe01g00263 . . . . . . . . . . Cpe05g00398 . . . . . . . . Cla02g02172 Cam02g2314 Cec02g2351 Cco02g2395 Clacu02g2289 Cmu02g2221 Cre02g2545 Cone1ag0555 Cone5ag1327 . . . Csa06g02465 . . Blo08g00058 Blo14g00243 . . Bpe08g00221 . Bma07g00205 Bma11g00246 . Cmo02g01350 Cmo20g00168 Cma02g01309 Cma20g00153 Car02g01097 Car20g00133 Cpe16g00820 . Bhi10g00181 . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g01399 CCT 591 948 E2F-DP Transcription Factor Family AT3G48160 56.4 1.1e-102 370.5
Cla02g02172 . 10 466 E2F-DP Transcription Factor Family AT5G22220 50.4 1.6e-100 363.6
Cla04g01021 . 138 525 E2F-DP Transcription Factor Family AT5G22220 52.9 1.8e-91 333.6
Cla08g01431 . 171 425 E2F-DP Transcription Factor Family AT1G47870 54.5 4.9e-66 248.8
Cla02g02172 . 10 466 E2F-DP Transcription Factor Family AT5G22220 50.4 1.6e-100 363.6
Cla04g01021 . 138 525 E2F-DP Transcription Factor Family AT5G22220 52.9 1.8e-91 333.6
Cla08g01431 . 171 425 E2F-DP Transcription Factor Family AT1G47870 54.5 4.9e-66 248.8
Cla01g01399 CCT 591 948 E2F-DP Transcription Factor Family AT3G48160 56.4 1.1e-102 370.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60743 PF16421 E2F_CC-MB 1.50E-34 No_clan Cla TF