Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02172 ATGTCGGGTTCTCGAGCTCCTAACTCCTCTGGACACCTGCCTGAGCAGATCATGCACTCTCTTAAGCGCCAACTCCCTTTCTCTTCTATGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTTGCCCCGGACCCTCGACTTTCCGATCAAGAACCTGACGCCATCGTAGTCAAATCTCCAATGAATTATGGTGTTATCACCTTCAATTTGTGTCTTTCTGCTGTACCTAATAAAAACTTTCTAATCTTCACTGAGCGAACTACTCTTCACTGCATTGCATTCGGTCCTTTTGGTCATTGGCAATTGAAGAGGAAGAGTGAGGTAGCAGATTATGAAGCTGAGTCAATTGATAGAGCTGCCGGTCCTAGATTTACTGAGGTTGTTAACAGTCCCCATCAAACACCTGTATCTGTCAAAGGAGGAAAGGGAAGCAAATCAAGGCTTACCAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATTTTGGTCTCTTGACAAAGAAGTTCATTAATCTGATTAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTCGAGGGAATTGGTCTCATAGAAAAGAAGCTTAAAAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGGTCAGGGGATGTCGATGACAATTATGCTGGTCTACAGGCAGAAGTAGAGAACCTTACCGTGGAGGAGCGTGGAATAGACGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTACTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTTAGTCAGTTTGAAGCGAAGTTTGAGGAGATAAATGCTGTGGAAGTGCCCCCAAGCTTGCCGTCAAGTTCAGGATTGAATGAAGCACCTGCAACAACGATAGTAACAGAGGATACCAGGGGAAAGGAAGTTGAAACACGGGAGCAAGATGTACACAGAATGTGCTCCGATCTAAACGCTTCACAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCTGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGTATCACAGACATGTGGAGAACTGAACCTGGCGTTGAGTGGAATGAATTGGGTACATTTCATGAAGATTATAGTATTGGCAATGTCAGCTCACCCCAAACCCAGACTCCACTTCCCGATGATGCACCTGATATGCCTTCTACCAATCCTTCTAGCAGCTGA 1449 44.58 MSGSRAPNSSGHLPEQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDPRLSDQEPDAIVVKSPMNYGVITFNLCLSAVPNKNFLIFTERTTLHCIAFGPFGHWQLKRKSEVADYEAESIDRAAGPRFTEVVNSPHQTPVSVKGGKGSKSRLTKCSRSGPQTPMSNFGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLTVEERGIDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEAKFEEINAVEVPPSLPSSSGLNEAPATTIVTEDTRGKEVETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPGVEWNELGTFHEDYSIGNVSSPQTQTPLPDDAPDMPSTNPSSS 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36787330 36794898 - ClCG02G022380.2 Cla02g02172 268298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02172 482 SUPERFAMILY Winged helix DNA-binding domain 163 223 IPR036390 -
Cla02g02172 482 MobiDBLite consensus disorder prediction 454 482 - -
Cla02g02172 482 SUPERFAMILY E2F-DP heterodimerization region 237 342 IPR037241 -
Cla02g02172 482 Coils Coil 245 272 - -
Cla02g02172 482 MobiDBLite consensus disorder prediction 133 157 - -
Cla02g02172 482 Gene3D - 161 227 IPR036388 -
Cla02g02172 482 SMART E2F_TDP_2 160 225 IPR003316 GO:0005667|GO:0006355
Cla02g02172 482 CDD E2F_DD 236 342 IPR032198 GO:0046983
Cla02g02172 482 PANTHER TRANSCRIPTION FACTOR E2FB 18 472 - -
Cla02g02172 482 Gene3D - 232 342 - -
Cla02g02172 482 PANTHER TRANSCRIPTION FACTOR E2F 18 472 IPR015633 GO:0000978|GO:0006357
Cla02g02172 482 Coils Coil 176 196 - -
Cla02g02172 482 Pfam E2F/DP family winged-helix DNA-binding domain 166 225 IPR003316 GO:0005667|GO:0006355
Cla02g02172 482 Pfam E2F transcription factor CC-MB domain 241 341 IPR032198 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02172 Cla-Chr2:36787330 Cla08g01431 Cla-Chr8:27149914 4.29E-70 dispersed
Cla02g02172 Cla-Chr2:36787330 Cla04g01021 Cla-Chr4:25311946 4.84E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60743 PF16421 E2F_CC-MB 1.50E-34 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02172 K06620 - csv:101219318 818.15