Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02176 ATGGCGACGTACTTTCACGGTGGTTCAGAAATCCAAGCGAATTCTGACGGAATTCATACTCTTTACCTTATGAACCCAAATTACGTACCTTACTCTGACACCCACTCTCAAACGCCTCCCAATATGCTCTTTCTCAACTCTTCTTCAACTCACGCGCTTAACCCTTCAACTCTTCCTCACGCGCCGCCTTCCAACAACCACTTCGTCGGAATTCCCCTCCCGACCACCGACAATCCTCGTCCATCCTACCACGAAATCTCAACCCTCCATCCGATGCCACCTCACCGCCTCCACTACAATCTATGGGCTCCTATGGACCAACAACCCGATCACGGAATTTCCGGCGATTCCGCCGATTTGACCTTCCGCCGCCCCACCACACAACAAGGTTTGTCCTTAAGCCTCTCCTCCCAACAATCGCTTTACCGGACACTCTCGGCCGAGCAGGAGATTCAAGGCGGCGGCGGCGGTGCTCCAAGTGGGGAGGAAATTCGGGTGTCGGGAAATTCACCGACGTCGGTGTCGGTGGTGTCGAGTGGAATAACGGGCGTTCAAAGCGTGATATTGGGGTCTAAGTACTTGAAAGCGGCTCAAGAACTTTTGGATGAAGTGGTTCATGTTGGCAAAGGAAATTTTAAATCCGACAAAGGGGATGGGACAAAGGACAAGATGAAGATGAAGAAAGAATCCATGGCTACGATTGGTGGAGACCCTTCCGCCTCCGTCGGCGGTGGTGAAAGTACTTCCAAGCCTGTTGCTGAGCTCAGCACTGCTCAAAGACAGGACCTTCAGATGAAAAAAGCCAAGCTCATTGGCATGCTTGATGAGGTGGAGCAGAAGTACAGACAATATCATCAACAAATGCAAGGAGTGGTGAGTTGTTTTGAGCAGGCAGCAGGTTTGGGGTCAGCCAAATCTTACGCTTCACTCGCACTTGAAACAATTTCAAAGCAATTCCGGTGCTTAAAAGATGCAATTTGTGCACAAATAAAAGCGACAGGGAAAAGCTTAGGAGAAGAAGAAAATTGGTTGGGTTCAAAAATTGAAGGGTCTTCAAGATTGAGATACGTTGATCATCATTTAAGGCAGCAAAGAGCTTTGCAACAATTGGGAATGATTCAACACAATACTTGGAGACCACAAAGAGGTTTGCCTGAACGTGCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAGCATTTCCTTCATCCCTATCCCAAAGATTCAGACAAGATTATTCTCGCCAAACAAACCGGACTCACAAGGAGCCAAGTATCGAATTGGTTTATAAATGCAAGAGTTCGTCTATGGAAGCCAATGGTTGAAGAAATGTACTTGGAGGAAATCAAAGAGCAAGAGCAAAACGGGGATTCCCAAGACATGATTAGAGGAGGAGATCATCATCATCATCATCATCAAAGCAATAACAACAATAATAATAGTAATAATGATCCACAATATTCCAAGACAGAAAATTTGATGAACAACAACAACAACCCTTCCCATTCTTCAATCTCATCATCCTCAATGTTAGGAATAGGATCAACGACGGGCGGCTTCAACCTCGTACGACCGTCCTCCGACAATAACATTCTCTCAAGTCCCAAAAAACCAAGGACCACCACCAGTAACAGTACAGCCACAATCAACAACAACAACCTGCCCGAAACCCCATCCTCAAAATCCATGCTTTTAAGAGACAATATTGTTCATGATCATCATAGGGGTAGTTTTGGTAATTCCAATACATACCCGGTTGGTGAAATTGGCTCAACCTTCAATTCTGAGCTTTTAACACCAAGATTTCATGCAAATGGAGTCTCTCTCACTCTTGCCCTTCCCCATAATAGTAATTCAGATCATCTCTCTCTTTCAGCCAACCAACCAAATTACCACCACCTATCCTCCAACCCAAATCTTCACTTGGGCAGATCAAGGCTTGATATCACCAATAATCATCATCCCGGACCACCCAATTTCTCCGACGTCAATCCCGCTGCCCCCCCACCACCTCATTCCGCTTACGACCACGTTGAAATGCAAACCACCAAAAGGTTCGCCGCTCAATTGTTGCCGGATTTTGTTGCCTGA 2088 46.31 MATYFHGGSEIQANSDGIHTLYLMNPNYVPYSDTHSQTPPNMLFLNSSSTHALNPSTLPHAPPSNNHFVGIPLPTTDNPRPSYHEISTLHPMPPHRLHYNLWAPMDQQPDHGISGDSADLTFRRPTTQQGLSLSLSSQQSLYRTLSAEQEIQGGGGGAPSGEEIRVSGNSPTSVSVVSSGITGVQSVILGSKYLKAAQELLDEVVHVGKGNFKSDKGDGTKDKMKMKKESMATIGGDPSASVGGGESTSKPVAELSTAQRQDLQMKKAKLIGMLDEVEQKYRQYHQQMQGVVSCFEQAAGLGSAKSYASLALETISKQFRCLKDAICAQIKATGKSLGEEENWLGSKIEGSSRLRYVDHHLRQQRALQQLGMIQHNTWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKIILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKEQEQNGDSQDMIRGGDHHHHHHQSNNNNNNSNNDPQYSKTENLMNNNNNPSHSSISSSSMLGIGSTTGGFNLVRPSSDNNILSSPKKPRTTTSNSTATINNNNLPETPSSKSMLLRDNIVHDHHRGSFGNSNTYPVGEIGSTFNSELLTPRFHANGVSLTLALPHNSNSDHLSLSANQPNYHHLSSNPNLHLGRSRLDITNNHHPGPPNFSDVNPAAPPPPHSAYDHVEMQTTKRFAAQLLPDFVA 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36850444 36853983 + ClCG02G022430.1 Cla02g02176 268302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02176 695 Gene3D - 381 459 - -
Cla02g02176 695 MobiDBLite consensus disorder prediction 474 559 - -
Cla02g02176 695 MobiDBLite consensus disorder prediction 647 668 - -
Cla02g02176 695 ProSiteProfiles 'Homeobox' domain profile. 375 438 IPR001356 GO:0003677
Cla02g02176 695 MobiDBLite consensus disorder prediction 211 260 - -
Cla02g02176 695 CDD homeodomain 378 439 IPR001356 GO:0003677
Cla02g02176 695 MobiDBLite consensus disorder prediction 211 230 - -
Cla02g02176 695 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 642 - -
Cla02g02176 695 MobiDBLite consensus disorder prediction 242 260 - -
Cla02g02176 695 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 642 - -
Cla02g02176 695 MobiDBLite consensus disorder prediction 149 172 - -
Cla02g02176 695 MobiDBLite consensus disorder prediction 450 472 - -
Cla02g02176 695 Pfam Homeobox KN domain 395 434 IPR008422 GO:0003677|GO:0006355
Cla02g02176 695 MobiDBLite consensus disorder prediction 450 559 - -
Cla02g02176 695 Pfam Associated with HOX 187 326 IPR006563 -
Cla02g02176 695 Coils Coil 260 287 - -
Cla02g02176 695 SUPERFAMILY Homeodomain-like 379 444 IPR009057 -
Cla02g02176 695 SMART prehox3 182 328 IPR006563 -
Cla02g02176 695 SMART HOX_1 378 442 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02176 Cla-Chr2:36850444 Cla09g00248 Cla-Chr9:2482644 3.34E-74 dispersed
Cla08g01664 Cla-Chr8:29284914 Cla02g02176 Cla-Chr2:36850444 1.63E-42 dispersed
Cla11g00386 Cla-Chr11:4333548 Cla02g02176 Cla-Chr2:36850444 1.20E-101 transposed
Cla10g01741 Cla-Chr10:33296516 Cla02g02176 Cla-Chr2:36850444 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60744 PF07526 POX 2.80E-46 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02176 - - csv:101220747 1008.05