Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02184 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGCTGAAAAGACCAGCAAAATTTGTTCACTTTATCAAATTCAGACTGTTGGAGGAAAAAAAAAGCGTATATGTAAGTGTTCCATGCAACAGCATGTTCACACTTGTGACTGTGAGATGTGGCCATTGTTCAAATCTGTTGTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCCCAACAGGGTCATAAACAGCAGCAGGTGAATGCTGGGGATTCAAGTAAGGACAGAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAAATGCACTAAAATTGGCTCTCTTGATTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAGCGAGTTCCTTCGGCGTATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAAGAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCATATTCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAACAAAATAA 597 41.37 MSLDMMASERVCYVHCNFCNTILALKRPAKFVHFIKFRLLEEKKSVYVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVNAGDSSKDRASSSSSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36970061 36976358 - ClCG02G022510.2 Cla02g02184 268310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02184 198 SUPERFAMILY HMG-box 134 182 IPR036910 -
Cla02g02184 198 Pfam YABBY protein 7 31 IPR006780 GO:0007275
Cla02g02184 198 Pfam YABBY protein 47 189 IPR006780 GO:0007275
Cla02g02184 198 PANTHER AXIAL REGULATOR YABBY 2-RELATED 6 30 - -
Cla02g02184 198 MobiDBLite consensus disorder prediction 81 120 - -
Cla02g02184 198 PANTHER AXIAL REGULATOR YABBY 2-RELATED 45 198 - -
Cla02g02184 198 PANTHER PROTEIN YABBY 6-RELATED 45 198 IPR006780 GO:0007275
Cla02g02184 198 MobiDBLite consensus disorder prediction 81 145 - -
Cla02g02184 198 Gene3D High mobility group box domain 134 185 IPR036910 -
Cla02g02184 198 MobiDBLite consensus disorder prediction 121 138 - -
Cla02g02184 198 PANTHER PROTEIN YABBY 6-RELATED 6 30 IPR006780 GO:0007275
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02184 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101222154 310.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02184 Cla-Chr2:36970061 Cla06g01123 Cla-Chr6:24074518 9.06E-58 dispersed
Cla02g02184 Cla-Chr2:36970061 Cla11g00285 Cla-Chr11:3276437 1.83E-61 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g02399 . 12 167 C2C2-YABBY Transcription Factor Family AT1G69180 57.1 9.9e-46 180.3
Cla01g00368 CCT 82 242 C2C2-YABBY Transcription Factor Family AT2G45190 58.6 2.1e-42 169.1
Cla02g02184 . 1 198 C2C2-YABBY Transcription Factor Family AT1G08465 58.0 1.4e-50 196.4
Cla01g00368 CCT 38 232 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.6e-43 172.9
Cla11g00285 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 7.5e-41 164.1
Cla01g00368 CCT 49 241 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 4.5e-50 194.9
Cla05g02553 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.8 2.0e-39 159.8
Cla11g00285 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 4.4e-61 231.1
Cla06g01123 . 8 222 C2C2-YABBY Transcription Factor Family AT2G26580 55.8 4.3e-56 214.5
Cla02g02184 . 1 198 C2C2-YABBY Transcription Factor Family AT2G26580 52.0 1.3e-44 176.4
Cla01g00368 CCT 40 204 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.4e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004363 1 4 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 1 2 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60745 PF04690 YABBY 8.90E-62 CL0114 Cla TF