Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02184 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGCTGAAAAGACCAGCAAAATTTGTTCACTTTATCAAATTCAGACTGTTGGAGGAAAAAAAAAGCGTATATGTAAGTGTTCCATGCAACAGCATGTTCACACTTGTGACTGTGAGATGTGGCCATTGTTCAAATCTGTTGTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCCCAACAGGGTCATAAACAGCAGCAGGTGAATGCTGGGGATTCAAGTAAGGACAGAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAAATGCACTAAAATTGGCTCTCTTGATTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAGCGAGTTCCTTCGGCGTATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAAGAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCATATTCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAACAAAATAA 597 41.37 MSLDMMASERVCYVHCNFCNTILALKRPAKFVHFIKFRLLEEKKSVYVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVNAGDSSKDRASSSSSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36970061 36976358 - ClCG02G022510.2 Cla02g02184 268310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02184 198 SUPERFAMILY HMG-box 134 182 IPR036910 -
Cla02g02184 198 Pfam YABBY protein 7 31 IPR006780 GO:0007275
Cla02g02184 198 Pfam YABBY protein 47 189 IPR006780 GO:0007275
Cla02g02184 198 PANTHER AXIAL REGULATOR YABBY 2-RELATED 6 30 - -
Cla02g02184 198 MobiDBLite consensus disorder prediction 81 120 - -
Cla02g02184 198 PANTHER AXIAL REGULATOR YABBY 2-RELATED 45 198 - -
Cla02g02184 198 PANTHER PROTEIN YABBY 6-RELATED 45 198 IPR006780 GO:0007275
Cla02g02184 198 MobiDBLite consensus disorder prediction 81 145 - -
Cla02g02184 198 Gene3D High mobility group box domain 134 185 IPR036910 -
Cla02g02184 198 MobiDBLite consensus disorder prediction 121 138 - -
Cla02g02184 198 PANTHER PROTEIN YABBY 6-RELATED 6 30 IPR006780 GO:0007275
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02184 Cla-Chr2:36970061 Cla06g01123 Cla-Chr6:24074518 9.06E-58 dispersed
Cla02g02184 Cla-Chr2:36970061 Cla11g00285 Cla-Chr11:3276437 1.83E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60745 PF04690 YABBY 8.90E-62 CL0114 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02184 K25796 - csv:101222154 310.842