Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02185 ATGTCGATTCGAACTTCTCCACATTTCCGAAAGCGAGCGGTGGAAATTTCTCGCGAGCCCAGTCGAACGGTGAACTTGACAGTGGAGTGGCGTTTCTTGCCTTTTGCACTCCGCCTTGCATTCTACAATGCACACGATAAAGAGAACGGCAGTGGATCAAAGAAAGCAAAACCCGCTCCAAGCAACTTAGAGAAATCCGCTTCAGCTGAACTACAGTCCGGGAAAACAGGGCCGAGTGGTGGAGAAAGTACTGGCAGACGGATAACTAGCAAGTATTTTGCATCAGAAAAGCATAAGGACAAGGATACAAAAGAAACAGAGGAACCCCCGATCAAACAAAAGTCTCCACAGGATCCTAAGGAATCTCCAGCCAAAAGAAAGTTTCAAATGGATAATGAGGGATCACCAAAAGCTTCACCTTTAAAAAAATCAAACAAAATTGTTGATAATGACGATGATGCTGTTTTTTCTAGTTCTAGAAAGAACATGTCTGAAGTCACTCCCAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACACAGAAACCTTTAGAAATTGAAGCGAGTGATGATGAGGAAACTAAGGGCACTGTTTCTTCTCTGAAGCCTAGTGGAAGAGGTAGGGGAGGAAGGGGTTCATCTGCTGCAACCGGTGGTGGTAGAGGCAGAGGTGGTGGGCGAGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTTCAGACTGCTTAGCCGGTTTAACTTTTGTAATTAGTGGAACCCTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGCCGAGTAACTGGATCTGTCAGCAAAAAAACAAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCAAAAGAGCTGGGAACTGGTTTTCTCACTGAGGATGGCTTATTTGACATGATCCGTGCATCAGGCCAAAAAGCTCCTCCAAGGCAAGATCCTAAAAAATCTGTGGTTAAGTCCTCTGTGGAATCTCCGACAGAGAAAAATTTCCAGAAAGTACAAGCAAAGCTTGGCTATTCTAGTGACAAGTGTTCCTTGGCTTTGGATGCAGCCCGCAAGGATTTGACTGCTAGTGCTTCACCTGCTAAGCAAAAAAGCCGAACAGCTGAATTCTCTAACCTAACATGGACCGAAAAATATAGGCCAAAGGTTCCAAATGACATTATAGGGAATCAGTCGCTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACAAAAACTTCATAGATGTTGGAAGCAAAAAGAAGGTTAAAAAGCTCAATGATTCTGGTGCCAAAAAAGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCCGCTAAGTTGGTTAGCCAGATGCTTGGTTTTGAGGCTATAGAGGTAAACGCCAGCGACAATCGAGGTAAATCAGATGCCAAGGTTCAAAAGGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCACTGCACTTCAGAATGGATCAGCCAAAACATCCCAAAACTGTGTTGATCATGGATGAGGTAGATGGAATGTCTGCGGGAGATAGGGGTGGAGTTGCCGATCTGATTGCAAGCATTAAAATGTCCAAAATTCCAATTATCTGCATCTGTAATGACCGTTACAGCCAGAAGCTGAAAAGCCTTGTGAACTACTGTCTTATTCTCAGCTTTAGGAAACCTACAAAACAACAGATGGCAAAAAGATTGATTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTAAATGGGGATATGCGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTGTCTATGTCAGTTATTAAGTATGATGATATTCGCCAACGGCTTCTGGGCAGTATGAAAGATGAAGACATCTCACCATTCACTGCTGTTGATAAGCTGTTTGGTTTCAATTCTGGGAAGTTAAGGATGGACGAAAGGATTGACCTCAGCATGAGTGATCTTGATTTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTACAGGCCAAGCGCTGTTAGTAAGGATGACAATGGGATCAAACGGATGGAATTGATTGCCCGTACAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGTTGTATTGCTTCTTGTGTAATCCCAGCTTCATTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAATAGATTTGGTGCATGGCTGGGAAAAAATTCAACGTTTGGAAAAAATATGAGGCTTTTGGAGGATTTGCACGTTCACATTCTTGCTTCTCGCGAATCCTGCTCAGGGAGGGAACACCTAAGAGTTGAGAACCTTACTCTATTTCTAAAGAGGTTGACTGGGCCACTACACACGCTGCCTAAGGATGAAGCTGTTAAAATGGTGGTCGAATTTATGAGTCTATATTCAATCAGTCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGATGGTGTAACCCCCGCAGTCAAAGCTGCTCTGACAAAGGCATACAAAGAAGTAAGCAAGACACACATGGTGCGGGCTGCAGATCTTATTACGCTTCCTGGAATGAAAAAAGCCCCTAAGAAGCGAATTGCAGCGATTCTAGAACCAACTGAGGATGCAGTTGAAGGTGCTGTTGGAGACACATTGGCAGAAAGTGACGACGAAAACTCTTTGGACAATGAGGATGCAGAAGACTCCACAAACGGTGAGAAGCTGCAATTGGAACTTCAAAGCTTGAATAAGAAAGGAATGCAAGTGCAATTGGATTTGAAGGGTGTGGAAAATTCAAGTGCGACGAAATCTGGTGGCAGAGGACGAGGAGGTAGAAGTTCTCAGGCTTCAGAGAAGAAAGGTGGTCGAGGTTCAGGTTCCGCCACAAAGAGGAAAAGATGA 3063 43.19 MSIRTSPHFRKRAVEISREPSRTVNLTVEWRFLPFALRLAFYNAHDKENGSGSKKAKPAPSNLEKSASAELQSGKTGPSGGESTGRRITSKYFASEKHKDKDTKETEEPPIKQKSPQDPKESPAKRKFQMDNEGSPKASPLKKSNKIVDNDDDAVFSSSRKNMSEVTPNKKLKSGSGKGITQKPLEIEASDDEETKGTVSSLKPSGRGRGGRGSSAATGGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRASGQKAPPRQDPKKSVVKSSVESPTEKNFQKVQAKLGYSSDKCSLALDAARKDLTASASPAKQKSRTAEFSNLTWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNKNFIDVGSKKKVKKLNDSGAKKAVLLCGGPGIGKTTSAKLVSQMLGFEAIEVNASDNRGKSDAKVQKGIGGSNANSIKELISNESLHFRMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLILSFRKPTKQQMAKRLIQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLLGSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINYRPSAVSKDDNGIKRMELIARTAESIADGDIINVQIRRHRQWQLSQSSCIASCVIPASLLHGQRETLEQGERNFNRFGAWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHLRVENLTLFLKRLTGPLHTLPKDEAVKMVVEFMSLYSISQEDFDTVLELSKFQGRKNPLDGVTPAVKAALTKAYKEVSKTHMVRAADLITLPGMKKAPKKRIAAILEPTEDAVEGAVGDTLAESDDENSLDNEDAEDSTNGEKLQLELQSLNKKGMQVQLDLKGVENSSATKSGGRGRGGRSSQASEKKGGRGSGSATKRKR 1020
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36993764 37007102 + ClCG02G022520.1 Cla02g02185 268311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02185 1020 CDD AAA 443 591 - -
Cla02g02185 1020 CDD HLD_clamp_RFC 591 649 - -
Cla02g02185 1020 SUPERFAMILY BRCT domain 251 330 IPR036420 -
Cla02g02185 1020 MobiDBLite consensus disorder prediction 46 251 - -
Cla02g02185 1020 Pfam Replication factor RFC1 C terminal domain 731 893 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Cla02g02185 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 402 651 IPR027417 -
Cla02g02185 1020 MobiDBLite consensus disorder prediction 144 158 - -
Cla02g02185 1020 PIRSF RFC1 40 994 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Cla02g02185 1020 MobiDBLite consensus disorder prediction 939 953 - -
Cla02g02185 1020 MobiDBLite consensus disorder prediction 979 998 - -
Cla02g02185 1020 ProSiteProfiles BRCT domain profile. 251 329 IPR001357 -
Cla02g02185 1020 SUPERFAMILY post-AAA+ oligomerization domain-like 662 807 IPR008921 GO:0003677|GO:0006260
Cla02g02185 1020 MobiDBLite consensus disorder prediction 91 132 - -
Cla02g02185 1020 Gene3D BRCT domain 228 330 IPR036420 -
Cla02g02185 1020 Gene3D - 591 661 - -
Cla02g02185 1020 MobiDBLite consensus disorder prediction 65 90 - -
Cla02g02185 1020 Pfam BRCA1 C Terminus (BRCT) domain 253 328 IPR001357 -
Cla02g02185 1020 Gene3D - 402 590 IPR027417 -
Cla02g02185 1020 MobiDBLite consensus disorder prediction 332 353 - -
Cla02g02185 1020 Gene3D - 663 773 - -
Cla02g02185 1020 MobiDBLite consensus disorder prediction 939 959 - -
Cla02g02185 1020 MobiDBLite consensus disorder prediction 235 250 - -
Cla02g02185 1020 CDD BRCT_RFC1 251 329 - -
Cla02g02185 1020 PANTHER REPLICATION FACTOR C SUBUNIT 1 49 991 - -
Cla02g02185 1020 SMART AAA_5 454 592 IPR003593 -
Cla02g02185 1020 MobiDBLite consensus disorder prediction 979 1020 - -
Cla02g02185 1020 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 49 991 - -
Cla02g02185 1020 MobiDBLite consensus disorder prediction 159 176 - -
Cla02g02185 1020 SMART BRCT_7 253 331 IPR001357 -
Cla02g02185 1020 Pfam ATPase family associated with various cellular activities (AAA) 458 570 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02185 Cla-Chr2:36993764 Cla05g00362 Cla-Chr5:3284044 8.59E-20 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02185 K10754 - csv:101204361 1652.11