Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02192 ATGAAATATTGCATTGATGCCGTCGGACTTACAAGATTGGTAATTTTCCTAGCAGCTTTTTCAACCATCTTTGGCGCATCGCCGCCGGTTCCGACCGAAAAGTCGAAATTAGACAGCTGGTTTTCAGAAAATGTGAAGCCCTTCGCTGATCGTAAGGCGGAGCTTGATCCGGCGCTTGTGACTGCAGAAGAAAACGCCACCGTGGTTAAAGTAAGGACCGACGGAAGTGGAGATTTCAAGACAATCACCGAAGCCATTAACAGCGTGCCAGCTGGCAACACGAGACGTGTAGTGATTTGGATTGGAGAAGGAGTTTATAAAGAGAAGCTTAAGATTGATAGAAATAAGCCTTTCGTTACTCTTTATGGCTCTCCTAATAATATGCCTAAATTGACCTTTGATGGCGATGCTGCCAAATACGGCACCGTTTACAGTGCAACCTTGATTGTTGAGTCTGATTATTTCACCGCCGCCAATCTCATCATTGAGAATTCATCTCCAAGGCCAGATGGGAAAAGAAAAGGAGCACAAGCATTAGCAGCAAGACTATTAGGGACTAAAGCGGCAGTTTACAATTGCAAATTCTATGGATTTCAAGATACCCTTTGCGATGACGACGGTTTGCATCTCTACAAAGATTGCTTCATCCAAGGCACCGTCGACTTCATTTTCGGAAAGGGAACATCTCTTTATTTGAATAGTCAATTGGATGTGGTGGGAGACGGAGGATTGGGAGTGATCACAGCCCATTCAAGGGAACAAGAATCAGATGGAAGTGGATATTCGTTCGTTCATTGTAGCATTACGGGAACTGGCGGCAAAAACACTTATTTGGGAAGAGCTTGGATGCCCAGATCTAGGGTTGTCTTCGCCTACACTACAATGGCTGACATCATTCATTCCGAAGGCTGGAACGATATGAACCATGCCGGTTACGATGCCACGGTTTTGTTCGGAGAATATAAGTGTTCGGGACCGGGATCGGAGCCGAGCGGGCGCGTAAAATACAGCAAGCAATTGAGTGATGTAGAAGTGAAACCGTTCATTAGTCTTGGTTACGTGCAGAGCGAGAAGTGGCTGCTTCCTCCTCCCAATCCTCAAGCTTAA 1107 45.8 MKYCIDAVGLTRLVIFLAAFSTIFGASPPVPTEKSKLDSWFSENVKPFADRKAELDPALVTAEENATVVKVRTDGSGDFKTITEAINSVPAGNTRRVVIWIGEGVYKEKLKIDRNKPFVTLYGSPNNMPKLTFDGDAAKYGTVYSATLIVESDYFTAANLIIENSSPRPDGKRKGAQALAARLLGTKAAVYNCKFYGFQDTLCDDDGLHLYKDCFIQGTVDFIFGKGTSLYLNSQLDVVGDGGLGVITAHSREQESDGSGYSFVHCSITGTGGKNTYLGRAWMPRSRVVFAYTTMADIIHSEGWNDMNHAGYDATVLFGEYKCSGPGSEPSGRVKYSKQLSDVEVKPFISLGYVQSEKWLLPPPNPQA 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37069144 37070908 - ClCG02G022610.1 Cla02g02192 268318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02192 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 33 361 - -
Cla02g02192 368 PANTHER PECTINESTERASE 63-RELATED 33 361 - -
Cla02g02192 368 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Cla02g02192 368 Gene3D - 62 363 IPR012334 -
Cla02g02192 368 SUPERFAMILY Pectin lyase-like 66 361 IPR011050 -
Cla02g02192 368 Pfam Pectinesterase 69 355 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02192 Cla-Chr2:37069144 Cla11g01109 Cla-Chr11:22535585 1.19E-154 dispersed
Cla02g02192 Cla-Chr2:37069144 Cla02g02194 Cla-Chr2:37077547 1.09E-84 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02192 K01051 - csv:101205095 618.616