Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02217 GACTTCAAATACACAACTTTTGATTTTCTCGTCAAGAACTCCTGGATCGCGAGTAGAGAATATTCTCGAGCATCCTTTCTTTTCTTCCGGTTCAGAATAATTCTTCAGCATCTTCTTTCTTTTCAAGTTTTGATTTTTGCTGAACGACTATTTGGGTTCTGTGTAATTTGGAGCGAGAAAGATCGGAGGAGAAACCCTCGTGTACTCGCTATGTCTTCTTCCGGAATCTCTACCCAAAGCGCCGAATTGTCAGATGCCGTTCAAGAACTAGTAATTTGCGAGCAGTTGGAAATGGGAAAGAAGGTAGAGATTCAAGGAACGGGGAATGGGAGTCATGATGGGGCTTGTGCAATTTGCTTAAATAAGATAGCACTTCAAGAAACTGCTTTAGTGAGAGGCTGCGAGCACGCCTATTGTGCGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCGACTTGTCCACAATGTAAACATCCATTTGAGTTCCTGATCGTTCATCGTTCTCTTGATGGGAGCATCCATGACTATATGTTCGAGGAGAGTGTATGCCTGCTTTTGAGAGCTTCGTGGTACAAACCACTGATCGTTGAAGAGCGGGAGGAAACCTATGATGATCCTGAGGACGATCAATACTATCCTTATGATCCTTATGAGGATGACAATGAAGAGTTTGAGGATGCTTACCTGGGTGTATCACCAAGTCTCCGTATCGGAAATCGAAGGTGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTCTTAGGTCCGAGTTTGCTGGACCTAGTTCATCGAGGGAGCCTGTAACGAAACATGCTTCCAAAGATAAAACAGGTCGACGAGCTAAAAGGGCCCTGAAACGGGAAGCTGCTGATAAAGCAGCAGCAGCTAAGCATCAAGAACATCTGGCTAGGTTTGGCCGGAAATGA 948 45.57 DFKYTTFDFLVKNSWIASREYSRASFLFFRFRIILQHLLSFQVLIFAERLFGFCVIWSEKDRRRNPRVLAMSSSGISTQSAELSDAVQELVICEQLEMGKKVEIQGTGNGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIVEEREETYDDPEDDQYYPYDPYEDDNEEFEDAYLGVSPSLRIGNRRWGDNGYVRAGRQEARPVLRSEFAGPSSSREPVTKHASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37296969 37300664 - ClCG02G022880.1 Cla02g02217 268343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02217 315 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 77 315 - -
Cla02g02217 315 ProSitePatterns Zinc finger RING-type signature. 134 143 IPR017907 -
Cla02g02217 315 MobiDBLite consensus disorder prediction 260 315 - -
Cla02g02217 315 MobiDBLite consensus disorder prediction 289 315 - -
Cla02g02217 315 ProSiteProfiles Zinc finger RING-type profile. 116 159 IPR001841 -
Cla02g02217 315 Pfam Ring finger domain 115 159 IPR001841 -
Cla02g02217 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 181 IPR013083 -
Cla02g02217 315 SMART ring_2 116 158 IPR001841 -
Cla02g02217 315 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 77 315 - -
Cla02g02217 315 SUPERFAMILY RING/U-box 115 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02216 Cla-Chr2:37291960 Cla02g02217 Cla-Chr2:37296969 8.11E-18 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02217 - - csv:101206609 406.757