Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02245 ATGCGGTCCCCACTTTTGCGCCAAGCGTTTCCCGGACTTTGCTCGTCAATGGGTGAAGGAACAGTAGCCGTAGCTCTTGAATTTGAGTTCCCAAAAGGGTCGTTGCTTTACTCCAATTACTGTGCTCTCTCAGGCTTTGGATTTCCAGAATTTTCCATCCAAGTGAGTTCGTCTCTCTCTGACTTGATTTTGCAAGACTCTGGTATGCAGTCGAAGTCTAAAAGTGTGAATCATCTAGGATCTGAACCACCAAATATGCAGCAGACTAGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAACCATATCTCCCCGCCACCAGCAGGAGGGAATGTGTCCAATTCAACATCACTGGAATGTACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCGATGTCAAATGATGATTTAAATGAAGACGATGATGATGACACCACAAAAGATTCACATGCAAGTTATGGGCAAGTACAGCACAACTGTCAGCATGCTGTTTCTGCTGCTCCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTATCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCACGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGTGGACGATTTGCCAAGAAAAATGAAGCTAATTCCTCGAGTTCTACTCTGAAGGACAAGGACTCCGGTTCTGGTCAAGCTATCTCGTCGCATTCTGCTGGTTCATCTGGTTCTGAAGCAGCGCCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAAGAAAGGACCCAGTTGCATGAGGCATATGAAGCTCGAAGTTATTTGAACGGCAGTAGCCAATTCCATAATTACAGTAGCTTCCAAGCTTCTCCGTATGGTTTACGGTCTGGTGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAGCGAAGTGTCTCAGAAAATCAGGCTGCACAGAGGCGTCTTGCCATCAAGTGA 1230 46.59 MRSPLLRQAFPGLCSSMGEGTVAVALEFEFPKGSLLYSNYCALSGFGFPEFSIQVSSSLSDLILQDSGMQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVSAAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYLNGSSQFHNYSSFQASPYGLRSGERGEDGDCSGQQRSVSENQAAQRRLAIK 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37564957 37570336 - ClCG02G023180.2 Cla02g02245 268371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02245 409 ProSiteProfiles NF-YA/HAP2 family profile. 234 294 IPR001289 GO:0003700|GO:0006355
Cla02g02245 409 MobiDBLite consensus disorder prediction 293 324 - -
Cla02g02245 409 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 98 395 - -
Cla02g02245 409 SMART cbf3 233 294 IPR001289 GO:0003700|GO:0006355
Cla02g02245 409 MobiDBLite consensus disorder prediction 109 136 - -
Cla02g02245 409 Gene3D - 234 296 - -
Cla02g02245 409 MobiDBLite consensus disorder prediction 108 154 - -
Cla02g02245 409 MobiDBLite consensus disorder prediction 364 409 - -
Cla02g02245 409 MobiDBLite consensus disorder prediction 270 328 - -
Cla02g02245 409 PRINTS CCAAT-binding transcription factor subunit B signature 237 259 IPR001289 GO:0003700|GO:0006355
Cla02g02245 409 PRINTS CCAAT-binding transcription factor subunit B signature 268 291 IPR001289 GO:0003700|GO:0006355
Cla02g02245 409 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 236 291 IPR001289 GO:0003700|GO:0006355
Cla02g02245 409 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 98 395 IPR001289 GO:0003700|GO:0006355
Cla02g02245 409 ProSitePatterns NF-YA/HAP2 subunit signature. 239 259 IPR018362 GO:0003677|GO:0016602
Cla02g02245 409 MobiDBLite consensus disorder prediction 272 288 - -
Cla02g02245 409 MobiDBLite consensus disorder prediction 72 92 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g02245 Cla03g01271 CCT
Cla02g02245 Cla03g01271 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02454 Cla-Chr1:38244533 Cla02g02245 Cla-Chr2:37564957 2.28E-36 dispersed
Cla02g02245 Cla-Chr2:37564957 Cla04g00026 Cla-Chr4:980657 2.01E-34 dispersed
Cla02g02245 Cla-Chr2:37564957 Cla03g01271 Cla-Chr3:27180956 2.60E-98 wgd
Cla02g02245 Cla-Chr2:37564957 Cla09g00377 Cla-Chr9:3676310 5.15E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60750 PF02045 CBFB_NFYA 2.50E-26 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02245 K08064 - csv:101212961 624.394