Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla02g02245 | ATGCGGTCCCCACTTTTGCGCCAAGCGTTTCCCGGACTTTGCTCGTCAATGGGTGAAGGAACAGTAGCCGTAGCTCTTGAATTTGAGTTCCCAAAAGGGTCGTTGCTTTACTCCAATTACTGTGCTCTCTCAGGCTTTGGATTTCCAGAATTTTCCATCCAAGTGAGTTCGTCTCTCTCTGACTTGATTTTGCAAGACTCTGGTATGCAGTCGAAGTCTAAAAGTGTGAATCATCTAGGATCTGAACCACCAAATATGCAGCAGACTAGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAACCATATCTCCCCGCCACCAGCAGGAGGGAATGTGTCCAATTCAACATCACTGGAATGTACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCGATGTCAAATGATGATTTAAATGAAGACGATGATGATGACACCACAAAAGATTCACATGCAAGTTATGGGCAAGTACAGCACAACTGTCAGCATGCTGTTTCTGCTGCTCCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTATCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCACGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGTGGACGATTTGCCAAGAAAAATGAAGCTAATTCCTCGAGTTCTACTCTGAAGGACAAGGACTCCGGTTCTGGTCAAGCTATCTCGTCGCATTCTGCTGGTTCATCTGGTTCTGAAGCAGCGCCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAAGAAAGGACCCAGTTGCATGAGGCATATGAAGCTCGAAGTTATTTGAACGGCAGTAGCCAATTCCATAATTACAGTAGCTTCCAAGCTTCTCCGTATGGTTTACGGTCTGGTGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAGCGAAGTGTCTCAGAAAATCAGGCTGCACAGAGGCGTCTTGCCATCAAGTGA | 1230 | 46.59 | MRSPLLRQAFPGLCSSMGEGTVAVALEFEFPKGSLLYSNYCALSGFGFPEFSIQVSSSLSDLILQDSGMQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVSAAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYLNGSSQFHNYSSFQASPYGLRSGERGEDGDCSGQQRSVSENQAAQRRLAIK | 409 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 37564957 | 37570336 | - | ClCG02G023180.2 | Cla02g02245 | 268371 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla02g02245 | 409 | ProSiteProfiles | NF-YA/HAP2 family profile. | 234 | 294 | IPR001289 | GO:0003700|GO:0006355 | |
Cla02g02245 | 409 | MobiDBLite | consensus disorder prediction | 293 | 324 | - | - | |
Cla02g02245 | 409 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 | 98 | 395 | - | - | |
Cla02g02245 | 409 | SMART | cbf3 | 233 | 294 | IPR001289 | GO:0003700|GO:0006355 | |
Cla02g02245 | 409 | MobiDBLite | consensus disorder prediction | 109 | 136 | - | - | |
Cla02g02245 | 409 | Gene3D | - | 234 | 296 | - | - | |
Cla02g02245 | 409 | MobiDBLite | consensus disorder prediction | 108 | 154 | - | - | |
Cla02g02245 | 409 | MobiDBLite | consensus disorder prediction | 364 | 409 | - | - | |
Cla02g02245 | 409 | MobiDBLite | consensus disorder prediction | 270 | 328 | - | - | |
Cla02g02245 | 409 | PRINTS | CCAAT-binding transcription factor subunit B signature | 237 | 259 | IPR001289 | GO:0003700|GO:0006355 | |
Cla02g02245 | 409 | PRINTS | CCAAT-binding transcription factor subunit B signature | 268 | 291 | IPR001289 | GO:0003700|GO:0006355 | |
Cla02g02245 | 409 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 236 | 291 | IPR001289 | GO:0003700|GO:0006355 | |
Cla02g02245 | 409 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 98 | 395 | IPR001289 | GO:0003700|GO:0006355 | |
Cla02g02245 | 409 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 239 | 259 | IPR018362 | GO:0003677|GO:0016602 | |
Cla02g02245 | 409 | MobiDBLite | consensus disorder prediction | 272 | 288 | - | - | |
Cla02g02245 | 409 | MobiDBLite | consensus disorder prediction | 72 | 92 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla02g02245 | Cla03g01271 | CCT | |
Cla02g02245 | Cla03g01271 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g02454 | Cla-Chr1:38244533 | Cla02g02245 | Cla-Chr2:37564957 | 2.28E-36 | dispersed | |
Cla02g02245 | Cla-Chr2:37564957 | Cla04g00026 | Cla-Chr4:980657 | 2.01E-34 | dispersed | |
Cla02g02245 | Cla-Chr2:37564957 | Cla03g01271 | Cla-Chr3:27180956 | 2.60E-98 | wgd | |
Cla02g02245 | Cla-Chr2:37564957 | Cla09g00377 | Cla-Chr9:3676310 | 5.15E-47 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60750 | PF02045 | CBFB_NFYA | 2.50E-26 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla02g02245 | K08064 | - | csv:101212961 | 624.394 |