Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02252 ATGAGGAAGCCTGAGGCCTCGGGTGGCAGTAGTGCAACCACGACCAAAACGACGACAACGATGAAGCTCCGAAAGGGGCTATGGTCGCCTGAAGAAGACGACAAGTTGATGAGCTATATGCTTAACAATGGCCAAGGCTGCTGGAGCGACGTGGCTCGTAATGCCGGTCTTCAACGCTGCGGCAAGAGCTGTCGTCTCCGTTGGATCAATTACTTACGCCCCGATCTCAAACGTGGCGCCTTCTCTCCCCAAGAAGAACACCTTATCATCCATTTGCATTCTCTTCTTGGCAACAGATGGTCTCAAATTGCGGCAAGATTACCAGGAAGAACCGATAACGAAATCAAGAATTTTTGGAACTCGACTATTAAAAAGAGGCTCAAGAATTTGTCCTCTTCCCCGTCGCCCAACACTAGCTCCGCTGGCTCCCCCTCTGCCGACTCGAAACCTAATCTTTTTGGCAACCTCTTATCGGCTCAAGATCAACAACAACCACAAGGGTTAATGGATGACTTCCCCATCTACGCTCCCGATCCCACACCTTCCGTTATTGCCATCGATCCCTTCCCTTTCCTCGCCACCCATGGTGGACCATTCTTCCCTGCCACCACCCCAACCTTCACCACTGGGGTCGAACCGGGCTATTTCCAGGAAGATGAGAGTTTCTTTAGTAATCTCCCTCTTTTGCAAAGTGTTAACGCTACCACCACCACCGTCGCTACCACCGCGGTCGCCATCGCCGAGAGAAGCCTAAAAACCGAAACCGTAGTTAAAGAAGCTAACCATAGTAATTACTTAATTAACAACATCAACTGCCTTGCTAATCATAATAATATTAGCAACAATAATCCAAAGAATGATAACACCATCAATGCTGAGGTTGGAGCAAATTTTCTTCATGAGGAATTTTCAATTGGCGAATGGGACTTGGAGGATTTGATGAAAGATGTTCCTTCTTACCCATGTCTCAATTTTCAAGTCCAATATTCTTCAATCGAAAACTCCGCCGTTGGATTTCTGTCCAGTAGTCGCTTTTCACTTTCAAAATCTCGACGGCCATCGGAGTTTTCTTTTTCCACCGTCGTCGCCGTCGCATTAGATCAGAACAGGTTGATGGCGTCACTGGCGCTTACTTCCTCGTATCTCCCTTCTCTCCGGTCGCGTCTTCCGAAATCCGAATCTAATGCTCAAATTCGTTGCTCCTCTCTCCGTTCCAGTCTTCCCAAACCAGCTATCTTCGGTAGCGGTGTCAGAACTAGCTTCCGCATTCCGCCTTCTTTATCCAATGAAGCTAAATCCGTTAAGCCAGCTCTAAATTTTGGAAGTTCTCGTGGAAATCTCGGTGGTTTTACTGTCCGAGCGTCGTCTTCTTCTGCTGCTGCTGTAGTTCCGGCTCCGGCTTCTCAGCCATGGCAAGGTGCGGCGATTAAGCCACTGATTGCTTCTATTGCTACAGGTATCATTCTGTGGTTTGTTCCAGTGCCGTCTGGCGTTTCTCGAAACGCGTGGCAATTGCTTGCGATATTCCTCGCTACCATCGTTGGGATTATTACTCAGCCCTTGCCTCTTGGTGCGGTTGCTTTGCTGGGACTTGGCGCCTCTGTTCTGACTAAAACCCTAACCTTCGCTGCTGCCTTCTCTGCGTTTGCTGATCCTATCCCATGGCTCATCGCTCTTGCTTTCTTCTTCGCTCGAGGGTTCATTAAGACCGGACTTGGTAATCGAATTGCTTATCAATTTGTTTCTCTATTCGGTAGTTCGTCGTTAGGGTTAGGGTATAGTTTAGTATTTAGCGAGGCCCTGTTGGCGCCGGCAATTCCTTCGGTGTCGGCCAGAGCAGGAGGGATATTCCTTCCACTGGTAAAATCGCTTTGTGTTGCTTGCGGTAGCAATGTTGGTGATGGGACGGAGAACCGTTTGGGAGCCTGGTTGATGCTAACTTGCTTTCAAACTTCGGTGATTTCATCATCCATGTTCTTGACGGCTATGGCTGCTAATCCTCTGAGTGCAAATCTGACGTATAACACGATTAAGCAGACGATTGGATGGACCGACTGGGCTAAAGCAGCCATTGTTCCAGGATTGATTTCCTTGATTGTGGTGCCATTGCTTTTGTATGTTATTTATCCGCCCACGGTGAAGAGCAGTCCAGACGCACCAAAGCTTGCTAGAGAGAAATTGGAAAAGATGGGACCAATGACCAAGAATGAGATTATAATGGCCGGAACTCTGTTTCTCACGGTGGGTCTTTGGGTTTTTGGAGGGGCACTTAATGTGGACGCTGTTACTGCTGCCATTTTGGGACTGTCCGTCCTTCTTGTAACCGGGGTTGTGACATGGAAAGAGTGCTTGGCAGAAGCTGTTGCCTGGGACACTCTAACTTGGTTTGCTGCACTCATTGCAATGGCAGGGTATCTCAACAAATATGGTCTAATCTCCTGGTTCAGCCAAACTGTAGTGAAGTTTGTTGGCGGCCTAGGTCTTTCATGGCAGCTTTCGTTCGGCATTTTAGTTCTTCTCTACTTCTACTCCCACTACTTCTTTGCAAGTGGAGCTGCTCATATAGGCGCTATGTTTACAGCCTTCTTATCTGTTGCTAGCGCTTTGGGAACTCCCCCCTACTTTGGAGCAATTGTACTTTCCTTCTTATCTAATCTGATGGGTGGCCTAACTCACTATGGCATTGGGTCAGCACCTGTTTTCTATGGTGCTAACTATGTTCCTCTTGCTCAATGGTGGGGCTATGGATTCATCGTATCTGTTGTCAACATCATTATCTGGCTCGGCGCTGGGGGAATTTGGTGGAAGGCCATTGGTTTATGGTGA 2826 48.12 MRKPEASGGSSATTTKTTTTMKLRKGLWSPEEDDKLMSYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEHLIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSSPSPNTSSAGSPSADSKPNLFGNLLSAQDQQQPQGLMDDFPIYAPDPTPSVIAIDPFPFLATHGGPFFPATTPTFTTGVEPGYFQEDESFFSNLPLLQSVNATTTTVATTAVAIAERSLKTETVVKEANHSNYLINNINCLANHNNISNNNPKNDNTINAEVGANFLHEEFSIGEWDLEDLMKDVPSYPCLNFQVQYSSIENSAVGFLSSSRFSLSKSRRPSEFSFSTVVAVALDQNRLMASLALTSSYLPSLRSRLPKSESNAQIRCSSLRSSLPKPAIFGSGVRTSFRIPPSLSNEAKSVKPALNFGSSRGNLGGFTVRASSSSAAAVVPAPASQPWQGAAIKPLIASIATGIILWFVPVPSGVSRNAWQLLAIFLATIVGIITQPLPLGAVALLGLGASVLTKTLTFAAAFSAFADPIPWLIALAFFFARGFIKTGLGNRIAYQFVSLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNVGDGTENRLGAWLMLTCFQTSVISSSMFLTAMAANPLSANLTYNTIKQTIGWTDWAKAAIVPGLISLIVVPLLLYVIYPPTVKSSPDAPKLAREKLEKMGPMTKNEIIMAGTLFLTVGLWVFGGALNVDAVTAAILGLSVLLVTGVVTWKECLAEAVAWDTLTWFAALIAMAGYLNKYGLISWFSQTVVKFVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPYFGAIVLSFLSNLMGGLTHYGIGSAPVFYGANYVPLAQWWGYGFIVSVVNIIIWLGAGGIWWKAIGLW 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37611454 37623296 - ClCG02G023250.2 Cla02g02252 268378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02252 941 CDD SANT 80 120 IPR001005 -
Cla02g02252 941 Gene3D - 22 78 - -
Cla02g02252 941 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 72 IPR017930 -
Cla02g02252 941 MobiDBLite consensus disorder prediction 129 153 - -
Cla02g02252 941 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Cla02g02252 941 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Cla02g02252 941 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Cla02g02252 941 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Cla02g02252 941 TIGRFAM dass: transporter, divalent anion:Na+ symporter (DASS) family 493 935 IPR001898 GO:0016020|GO:0022857|GO:0055085
Cla02g02252 941 CDD ArsB_NhaD_permease 513 935 - -
Cla02g02252 941 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Cla02g02252 941 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Cla02g02252 941 Pfam Sodium:sulfate symporter transmembrane region 478 941 IPR001898 GO:0016020|GO:0022857|GO:0055085
Cla02g02252 941 PANTHER DICARBOXYLATE TRANSPORTER 2.1, CHLOROPLASTIC 453 941 IPR030676 -
Cla02g02252 941 CDD SANT 28 72 IPR001005 -
Cla02g02252 941 MobiDBLite consensus disorder prediction 7 21 - -
Cla02g02252 941 MobiDBLite consensus disorder prediction 1 21 - -
Cla02g02252 941 SMART sant 77 125 IPR001005 -
Cla02g02252 941 SMART sant 24 74 IPR001005 -
Cla02g02252 941 Gene3D - 79 145 - -
Cla02g02252 941 PANTHER DICARBOXYLATE TRANSPORTER 1, CHLOROPLASTIC 453 941 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02252 Cla-Chr2:37611454 Cla10g01179 Cla-Chr10:26406135 2.25E-75 dispersed
Cla10g00893 Cla-Chr10:20682084 Cla02g02252 Cla-Chr2:37611454 1.94E-143 transposed
Cla02g02252 Cla-Chr2:37611454 Cla09g00382 Cla-Chr9:3732558 2.67E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60751 PF00939 Na_sulph_symp 2.70E-137 CL0182 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02252 - - bhj:120088316 1014.6