Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02261 ATGACTGATCCTTACCCCATCAACAATAATGGCTCCTTTGGCAATTTATACCCTCTTCACCATTACTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAATTCTTACTCTCCTTATTATGATCATCCCTTCTCTCTTTCTTACTCCAATGATAATAATAACAATAATAATACCCTAATGACCTCTCCTCATTATCCTTCTTCCTCTCCTCAAGTCCTTCTTCCCCTTCTAAGCTTAAGCCCTGCAAGAGTAGCACAAGATCATGATAATGAAAATCACTCATTTTCCAAAGACTTGATCAAGAACTTTTGCAACCCAGCTGAAGATGATGTTGACAATGATAATGATGATGATGATGATCAAAGTGTTACTGTTGCTTTGCATTTAGGGCTTCCAACTCCTTCTTCTTCTTCTTCTAATTCTGATTTGATTTTGAGACTTTCTTCAACTGAGATCTCAGATCAAGATGATCATCATCAATTAGAAGATCAAGTTCCTAATCCTAATTATTCTTCTTCTAATTCCAATATTATTACTAGTGCTGCTACTACTACTACTGGACTTAATAAGGGTCAATATTGGATTCCAACTCCTGCTCAGATTCTTATTGGTCCAACTCAGTTTTCTTGCCCTCTTTGCTTCAAGACTTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCACAATCACTAAGAGGAACACAACCAACAGCAATGCTTAGGCTGCCATGTTATTGCTGTGCAGTTGGGTGCAGAAACAACATAGACCATCCAAGGTCAAAGCCATTAAAAGACTTCAGAACTCTTCAAACACATTACAAAAGAAAACATGGAATGAAGCCATTTACATGTAGAAAATGTGGGAAAGCTTTTGCTGTGAGAGGAGATTGGAGAACCCATGAGAAAAATTGTGGGAAGCTTTGGCATTGCACTTGTGGCTCTGATTTTAAGCATAAGAGATCTCTTAAAGATCATATCAAAGCCTTTGGACATGGCCATGCAGCTTATGGAATTGATCACTCTTTTGAAGAAGATGATGAGCCAGCTTCTGAGATTGAAACATGA 1095 37.99 MTDPYPINNNGSFGNLYPLHHYFSSSSSSSSSSNSYSPYYDHPFSLSYSNDNNNNNNTLMTSPHYPSSSPQVLLPLLSLSPARVAQDHDNENHSFSKDLIKNFCNPAEDDVDNDNDDDDDQSVTVALHLGLPTPSSSSSNSDLILRLSSTEISDQDDHHQLEDQVPNPNYSSSNSNIITSAATTTTGLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAVGCRNNIDHPRSKPLKDFRTLQTHYKRKHGMKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIDHSFEEDDEPASEIET 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37716394 37719228 + ClCG02G023350.1 Cla02g02261 268387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02261 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 292 319 IPR013087 -
Cla02g02261 364 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 363 - -
Cla02g02261 364 SUPERFAMILY beta-beta-alpha zinc fingers 273 312 IPR036236 -
Cla02g02261 364 ProSitePatterns Zinc finger C2H2 type domain signature. 210 230 IPR013087 -
Cla02g02261 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 208 235 IPR013087 -
Cla02g02261 364 SMART c2h2final6 255 287 IPR013087 -
Cla02g02261 364 SMART c2h2final6 318 341 IPR013087 -
Cla02g02261 364 SMART c2h2final6 208 230 IPR013087 -
Cla02g02261 364 SMART c2h2final6 292 312 IPR013087 -
Cla02g02261 364 MobiDBLite consensus disorder prediction 154 174 - -
Cla02g02261 364 Gene3D Classic Zinc Finger 207 230 - -
Cla02g02261 364 PANTHER ZINC FINGER PROTEIN WIP2 1 363 IPR043584 GO:0003700|GO:0010468
Cla02g02261 364 Gene3D Classic Zinc Finger 252 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02261 Cla-Chr2:37716394 Cla09g00973 Cla-Chr9:10230265 3.95E-27 dispersed
Cla01g01224 Cla-Chr1:23131996 Cla02g02261 Cla-Chr2:37716394 2.65E-99 transposed
Cla03g00953 Cla-Chr3:16231739 Cla02g02261 Cla-Chr2:37716394 3.98E-101 transposed
Cla04g00085 Cla-Chr4:2589146 Cla02g02261 Cla-Chr2:37716394 1.63E-121 transposed
Cla10g01643 Cla-Chr10:32073533 Cla02g02261 Cla-Chr2:37716394 1.72E-116 transposed
Cla02g02261 Cla-Chr2:37716394 Cla09g00386 Cla-Chr9:3778719 6.21E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60753 None None None None Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02261 - - bhj:120089206 573.933