Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02264 ATGGGATCCATGAATTCAAACAATTGGCTTTCCTTTCCACTTTCACCTACTAATCCTTCTTTACCACCACATCTTCAAACCACAACTCATTCCCATCATTTCTCTTTGGGAAATTTGGAGAATGATCATAATATGGACATCCCATTTCAAACCCACCATGAGTGGAATCTGATAAGTAATCAAAGTGGTGGTGAAGTTCCAAAAATTGCAGATTTTTTAGGAGTAAGCAAGGCAGAAAATGAGACAGATCTCATTGGGTTTAATGAAATTCATCATCAAAGCAATGATACAGATTATTTGTTTCCAATCACAAGATTAGTTTCTGTTCATCAACAACAACAACAACAACCCACTGCTCCTCCTCCTCATATAAATCTTGACTCTTCTACTAACTTTGACCTTCAAGATAATTCCAATTGTTTGCAATCTTTAACCCTTTCAATGGGCAGTGGCAAACCCTCTACTTGTGAACAAACAACCTCCACCCCTGACAATAGTACCTCCAATAATAATAATAACAATAATAATACCACTCTTGATGTCACCCCTCGAAGAACTTTGGACACTTTTGGCCAAAGAACTTCCATTTATCGCGGTGTCACCAGGCATAGATGGACAGGAAGGTATGAAGCACATTTGTGGGATAATAGTTGCAGAAGGGAAGGGCAGTCCAGGAAGGGTCGGCAAGTCTATTTGGGTGGGTACGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATCTTGCTGCATTGAAATACTGGGGAACATCCACCACCACAAATTTTCCTATTAGTAACTACGAGAAGGAAGTGGAGGAAATGAAGCACATGACAAGACAAGAATTTGTGGCTGCAATTAGAAGGAAAAGTAGTGGATTTTCAAGGGGTGCATCAATGTATCGTGGAGTTACAAGGCACCACCAACATGGAAGATGGCAGGCTAGGATTGGAAGAGTAGCAGGAAACAAAGATCTTTATTTGGGAACTTTCAGTACAGAAGAGGAAGCAGCAGAAGCATATGACATAGCGGCGATAAAATTTAGAGGGCTAAATGCAGTAACAAATTTCGACATGAGTCGTTACGACGTGAAAAGCATATTAGAGAGCAACACGCTCCCAATCGGTGGCGGTGCAGCGAAGCGACTAAAAGAGGCTCAAGCCATGGAATCATCTCGAAAACGAGATGAGATGATTGCCCTAGGTTCCTCTTCCTCCTCCTCCTCTTGCTTCCAATATGGAACCTCTTCCTCCTCAACTAATAATTCCTCCCATTACCCTAATTTACTCCAACAACCAAATCTCAATATGGACCATCACCTTCAAACCCAACCTTTGCTCTCTCTTCAAAACCACCATGATATTTCTCATTACACCCACCATCATTCCTCCTCCTTCCACCACCCTTCTTCTTCTTACATCCACCACTCATCTGATCATTCCGCTTATCCTAACAACAACAGCCATCCATTCTACGGTGGAGGATATCTTCATAATCATCCCGCTTTGCTTCACGGGATGATCAATATGGGCGGTGGAGGTGGCGGAGGCGGCGGAGGAGCTTCTAGTTTGGACACTAATAACAATACTAATACCTTGAATCATTTTGAGAATAATACTAGTGGAGGAGGGTATCTTGGGAATGCATTTGGGATGGGTTCTACCTCGAACAGCAGCGGCGCCGCAGCGGAGGAATATGCGCTCGTTAAGGTTGACTATGACATGCCTAATTCTGGCGGGTACGGTGGTTGGACGGGGGATTCGGTTCAAGGTTCTAACGCTGGGGTTTTCTCTATGTGGAACGATTGA 1803 43.21 MGSMNSNNWLSFPLSPTNPSLPPHLQTTTHSHHFSLGNLENDHNMDIPFQTHHEWNLISNQSGGEVPKIADFLGVSKAENETDLIGFNEIHHQSNDTDYLFPITRLVSVHQQQQQQPTAPPPHINLDSSTNFDLQDNSNCLQSLTLSMGSGKPSTCEQTTSTPDNSTSNNNNNNNNTTLDVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAMESSRKRDEMIALGSSSSSSSCFQYGTSSSSTNNSSHYPNLLQQPNLNMDHHLQTQPLLSLQNHHDISHYTHHHSSSFHHPSSSYIHHSSDHSAYPNNNSHPFYGGGYLHNHPALLHGMINMGGGGGGGGGGASSLDTNNNTNTLNHFENNTSGGGYLGNAFGMGSTSNSSGAAAEEYALVKVDYDMPNSGGYGGWTGDSVQGSNAGVFSMWND 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37751304 37754666 + ClCG02G023380.2 Cla02g02264 268390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02264 600 Pfam AP2 domain 196 254 IPR001471 GO:0003700|GO:0006355
Cla02g02264 600 Pfam AP2 domain 299 348 IPR001471 GO:0003700|GO:0006355
Cla02g02264 600 CDD AP2 297 358 IPR001471 GO:0003700|GO:0006355
Cla02g02264 600 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 599 - -
Cla02g02264 600 CDD AP2 195 264 IPR001471 GO:0003700|GO:0006355
Cla02g02264 600 ProSiteProfiles AP2/ERF domain profile. 196 262 IPR001471 GO:0003700|GO:0006355
Cla02g02264 600 Gene3D AP2/ERF domain 196 264 IPR036955 GO:0003700|GO:0006355
Cla02g02264 600 Gene3D AP2/ERF domain 298 358 IPR036955 GO:0003700|GO:0006355
Cla02g02264 600 ProSiteProfiles AP2/ERF domain profile. 298 356 IPR001471 GO:0003700|GO:0006355
Cla02g02264 600 SUPERFAMILY DNA-binding domain 297 358 IPR016177 GO:0003677
Cla02g02264 600 MobiDBLite consensus disorder prediction 143 182 - -
Cla02g02264 600 SMART rav1_2 298 362 IPR001471 GO:0003700|GO:0006355
Cla02g02264 600 SMART rav1_2 196 268 IPR001471 GO:0003700|GO:0006355
Cla02g02264 600 MobiDBLite consensus disorder prediction 457 479 - -
Cla02g02264 600 PRINTS Ethylene responsive element binding protein signature 197 208 IPR001471 GO:0003700|GO:0006355
Cla02g02264 600 PRINTS Ethylene responsive element binding protein signature 338 358 IPR001471 GO:0003700|GO:0006355
Cla02g02264 600 MobiDBLite consensus disorder prediction 108 131 - -
Cla02g02264 600 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 8 599 - -
Cla02g02264 600 SUPERFAMILY DNA-binding domain 195 264 IPR016177 GO:0003677
Cla02g02264 600 MobiDBLite consensus disorder prediction 402 422 - -
Cla02g02264 600 MobiDBLite consensus disorder prediction 463 479 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02264 Cla-Chr2:37751304 Cla11g00873 Cla-Chr11:14128578 4.25E-135 dispersed
Cla02g02264 Cla-Chr2:37751304 Cla08g01641 Cla-Chr8:29034235 3.97E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60754 PF00847 AP2 1.10E-12 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02264 K09285 - csv:101207097 1016.53