Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla02g02306 | ATGGATCCTCTTAAGCTCTCTCCTAGACTCTTATCTCCACTGAGCTTAGCTTTGAGCTTTCTCTTAGGGCTCCTAGCTCCATGGGTCCCTTTCTCGAGCTCTCAGCTCATAGGTTCTCTAGCTTTCTTAGGCTCTCCTCATGGATGTGCTATTTTGGGAGGCTATCAATTTATTTCTGAAGGGTGTTGCATGAGCATGTTGGAAGTTGAGGCATTACTTGAGGAGCTTAGAGATTTAGAAGGAGGGTGGTCGGGTCCAATTCCTCTGTTGGAGGTGGAGTCCGACGCACTGGAGGTCATCAGGCCTCTCAATAGGGAAGTGTATTTTTATGTTGAGATTGGTGTCCTTATTGAGGGTTGTTCAGCGGCGTTAACCTCATTTCCTGCTTTTTTTTTGTTCGATCACTCTCTAACCCTTCAATTTTTCCATCTGGATGATTGTATGAGTACCATAGAATTCAGAGAGAAGGGGATGTATCAGCAGCCGAAGTCAAGGGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACCGAGTTGCGCCTTGCATCAATAGATTCTCAAGCAGCAACTTCTCGTCCAGAGTTCAAAGGTGTCACTTTCAGGAAAGCTTCAACTGGTGGTTTTGCTAGGAGTCGTAATGATGTACACGAGCTACTCGATTGTACTGTTTGCATGAATTTAATGCATCCCCCAATTTACCAGTGTGCAAATGGGCACACTCTTTGTTCAAGCTGCAAGGCGAGGGTTCAGAACTGTTGCCCGACCTGCCGGCATGAGCTGGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCTGAGTCGCTCGAGCTCCCTTGTGTGTACCAAAACCTAGGTTGCATTGACATGTTCCCATATTACAGCAAGCTTAAACATGAGAAGAATTGTAAATACCGGCCGTACAACTGCCCTTACGCTGGAGGTGAATGTCGTGTAACTGGTGATATTCCATACCTTGTCATGCATCTCAAGGACGATCACGAGGTTGATATGCATGATGGATGTTCCTTCAGCCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGCTTACTGTTTTCAACTGCTTCGGACGACAATTCTGTTTGCACTTCGAAGCATTTCGCTTAGGAACAGCACCTGTTTACATGGCATTCCTCCGGTTCATGGGAGACGATGACGATGCAAAACAATTTTCTTACAGTCTGGAAGTTGGTGGAAATGGAAGAAAACTCATCTGGCAAGGTATTCCTAGAAGTATCCGCGATAGCCATCGGAAGGTTCGAGACAGTCACGATGGACTAATCATTCAGAGGAAGTTGGCACTATTCTGCTCTGGAAATGAGGGGATGGAACTGAAGTTAAAGGTTACAGGGCGAATATGGAGAGTAAGAGTCTTCACCGGCTTAAACCCTAAACCCTGTGGAGTTGGCGTAGTGGGAAGGAAGAAAACCGCCGAACAAATGCTGATTACTCGAAAGCTTTCTGCTTCGAACCTCAAATCCTTTCTTTCTCTGCGTTTCGTTTCCCCTTCTCTGACTTCGCACTTGTTTTCTTCACCTCTCTGCTTAAACCCACCAATCCTTTGCCCACTTCCTCCCACTCTTTCGCCGTCTTTCTCTTCCAAACCCACACCTCCAGAAGCTTCCAACCTCACCCGCGATGGCAACTACGACGAAGCCACTTCCCGATTCTCCCTCGTCTGCCCTGGCTGTGGAGTTCACATGCAAGACACCAATCCCAAACATCCTGGCTTCTTCGTCAAACCCTCGAGAAAAGATTCCAATTATCGCTTACTTACCCATCTTGTCCCCGTCCATGATGAATCTGAATGCTCCGAATTTCTCAAGAGAGGCCTAATAATCGAGCCAGATAATCAGAAAACTGAAGAGAATGTGACCGAGAAACCCCACAAGCCGACCGTGTGTTCGCGGTGCCACTCATTGAGGCATTATGGGAAGGTAAAGGATCCTTCAGTAGAGAATTTACTGCCGGATTTTGATTTCGATCATACCATCGGTAGGAGACTGGCGTCGACTTCGGGAACCCGATCTGTTGTTCTGATCGTCGTTGATGCTGCAGATTTTGATGGGTCATTCCCAAAGAAGGTAGCGAACTTGGTCTCGGCCACTATTGAGGATAATTCAGCTGCCTGGAAACAGGGGAAATCAGGGAATGTGCCTAGAGTGGTGCTTGTAGTGACAAAAATTGATCTGCTGCCTAGCTCTTTATCACCGACGAGATTTGAGCATTGGGTGAGGCAGAGAGCGAGGGAGGGAGGGATTAACAAGATAACGAGTTTGCATATGGTGAGTGCGGTTAGAGATTGGGGGCTGAAAAATTTGGTGGAGGATGTAATTGAATTGGTTGGGGCGAGAGGAAATGTGTGGGCAATTGGAGCACAAAATGCTGGGAAAAGCACGCTGATTAATTCAATAGGAAAGCATGTAGGTGGGAAGATTACGCAGTTGACTGAAGCACCAGTTCCTGGGACAACGTTGGGGATAATCAGAGTAGAGGGAATTTTTCCGGGTCAAGCCAAATTGTTTGATACTCCTGGGCTTCTCAATCCCCATCAGATTACTACGAGATTGACTAGGGAAGAGCAGAAACTTGTTCACATCAGCAAGGAATTGAAGCCCAGGACTTACAGGATTAAGGTTGGTCACACAATTCATGTTGCTGGCCTCATGAGGCTAGATGTGGAAGAAACAACTGTGGATACAATTTATGTTACGGTGTGGGCATCTCCTTATCTTCCATTACACATGGGGAAAACAGAAAATGCAACCAAAATACAGGAGGACCATTTTGGGAATCAATTGCAGCCACCTATAGGCAAAGATCGAGTTGCAGAACTTGGAAAATGGGTGAGAAGGGAATTTCGTGTTTGTGGAAGTAGTTGGGATTCAAGTTGTGTAGATGCTGCTGCTGCTGGCCTGGGTTGGTTCGCCATTGGACTAAAAGGCGAGGCAGTCTTGAGCATATGGACTTATGAGGGGATCGAGGTTGTTATACGAAGTTCTGTCATTCCTTACAGATCAAACTTCTTTGAAGATGCTGGATTTACAGTCTCGAAAATTGTCTCCAAGGCTGATCAGGTTGCAAATAAACCACATGATCAAAGCGAAAAGAAGAAGAAAAAGGGTGACCCCAAAGTTCGTGTGCTGACTGAGACGTCAGTATCGAAAGCTCGCTCCAAATATGATTCTGCTTAA | 3240 | 46.27 | MDPLKLSPRLLSPLSLALSFLLGLLAPWVPFSSSQLIGSLAFLGSPHGCAILGGYQFISEGCCMSMLEVEALLEELRDLEGGWSGPIPLLEVESDALEVIRPLNREVYFYVEIGVLIEGCSAALTSFPAFFLFDHSLTLQFFHLDDCMSTIEFREKGMYQQPKSREEHASSAASFCKEVTELRLASIDSQAATSRPEFKGVTFRKASTGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECRVTGDIPYLVMHLKDDHEVDMHDGCSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSHDGLIIQRKLALFCSGNEGMELKLKVTGRIWRVRVFTGLNPKPCGVGVVGRKKTAEQMLITRKLSASNLKSFLSLRFVSPSLTSHLFSSPLCLNPPILCPLPPTLSPSFSSKPTPPEASNLTRDGNYDEATSRFSLVCPGCGVHMQDTNPKHPGFFVKPSRKDSNYRLLTHLVPVHDESECSEFLKRGLIIEPDNQKTEENVTEKPHKPTVCSRCHSLRHYGKVKDPSVENLLPDFDFDHTIGRRLASTSGTRSVVLIVVDAADFDGSFPKKVANLVSATIEDNSAAWKQGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREGGINKITSLHMVSAVRDWGLKNLVEDVIELVGARGNVWAIGAQNAGKSTLINSIGKHVGGKITQLTEAPVPGTTLGIIRVEGIFPGQAKLFDTPGLLNPHQITTRLTREEQKLVHISKELKPRTYRIKVGHTIHVAGLMRLDVEETTVDTIYVTVWASPYLPLHMGKTENATKIQEDHFGNQLQPPIGKDRVAELGKWVRREFRVCGSSWDSSCVDAAAAGLGWFAIGLKGEAVLSIWTYEGIEVVIRSSVIPYRSNFFEDAGFTVSKIVSKADQVANKPHDQSEKKKKKGDPKVRVLTETSVSKARSKYDSA | 1079 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 38182634 | 38192917 | + | ClCG02G023800.2 | Cla02g02306 | 268432 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla02g02306 | 1079 | Pfam | 50S ribosome-binding GTPase | 803 | 878 | IPR006073 | GO:0005525 | |
Cla02g02306 | 1079 | SUPERFAMILY | TRAF domain-like | 277 | 468 | - | - | |
Cla02g02306 | 1079 | MobiDBLite | consensus disorder prediction | 1041 | 1061 | - | - | |
Cla02g02306 | 1079 | MobiDBLite | consensus disorder prediction | 1044 | 1061 | - | - | |
Cla02g02306 | 1079 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 277 | 332 | IPR013083 | - | |
Cla02g02306 | 1079 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 692 | 872 | IPR027417 | - | |
Cla02g02306 | 1079 | Gene3D | - | 681 | 867 | IPR027417 | - | |
Cla02g02306 | 1079 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 177 | 276 | IPR013083 | - | |
Cla02g02306 | 1079 | CDD | RING-HC_SIAHs | 222 | 260 | - | - | |
Cla02g02306 | 1079 | CDD | YqeH | 650 | 862 | - | - | |
Cla02g02306 | 1079 | Pfam | Seven in absentia protein family | 266 | 465 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Cla02g02306 | 1079 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 338 | 465 | IPR008974 | GO:0005515 | |
Cla02g02306 | 1079 | SUPERFAMILY | RING/U-box | 206 | 263 | - | - | |
Cla02g02306 | 1079 | PANTHER | GENETIC INTERACTOR OF PROHIBITINS 3, MITOCHONDRIAL | 548 | 1046 | - | - | |
Cla02g02306 | 1079 | ProSiteProfiles | Zinc finger SIAH-type profile. | 277 | 337 | IPR013010 | GO:0008270 | |
Cla02g02306 | 1079 | ProSiteProfiles | Zinc finger RING-type profile. | 224 | 260 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g02306 | Cla-Chr2:38182634 | Cla04g00105 | Cla-Chr4:3138412 | 7.63E-161 | dispersed | |
Cla05g01150 | Cla-Chr5:12245716 | Cla02g02306 | Cla-Chr2:38182634 | 9.76E-08 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla02g02306 | - | - | cmax:111483924 | 1004.97 |