Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02306 ATGGATCCTCTTAAGCTCTCTCCTAGACTCTTATCTCCACTGAGCTTAGCTTTGAGCTTTCTCTTAGGGCTCCTAGCTCCATGGGTCCCTTTCTCGAGCTCTCAGCTCATAGGTTCTCTAGCTTTCTTAGGCTCTCCTCATGGATGTGCTATTTTGGGAGGCTATCAATTTATTTCTGAAGGGTGTTGCATGAGCATGTTGGAAGTTGAGGCATTACTTGAGGAGCTTAGAGATTTAGAAGGAGGGTGGTCGGGTCCAATTCCTCTGTTGGAGGTGGAGTCCGACGCACTGGAGGTCATCAGGCCTCTCAATAGGGAAGTGTATTTTTATGTTGAGATTGGTGTCCTTATTGAGGGTTGTTCAGCGGCGTTAACCTCATTTCCTGCTTTTTTTTTGTTCGATCACTCTCTAACCCTTCAATTTTTCCATCTGGATGATTGTATGAGTACCATAGAATTCAGAGAGAAGGGGATGTATCAGCAGCCGAAGTCAAGGGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACCGAGTTGCGCCTTGCATCAATAGATTCTCAAGCAGCAACTTCTCGTCCAGAGTTCAAAGGTGTCACTTTCAGGAAAGCTTCAACTGGTGGTTTTGCTAGGAGTCGTAATGATGTACACGAGCTACTCGATTGTACTGTTTGCATGAATTTAATGCATCCCCCAATTTACCAGTGTGCAAATGGGCACACTCTTTGTTCAAGCTGCAAGGCGAGGGTTCAGAACTGTTGCCCGACCTGCCGGCATGAGCTGGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCTGAGTCGCTCGAGCTCCCTTGTGTGTACCAAAACCTAGGTTGCATTGACATGTTCCCATATTACAGCAAGCTTAAACATGAGAAGAATTGTAAATACCGGCCGTACAACTGCCCTTACGCTGGAGGTGAATGTCGTGTAACTGGTGATATTCCATACCTTGTCATGCATCTCAAGGACGATCACGAGGTTGATATGCATGATGGATGTTCCTTCAGCCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGCTTACTGTTTTCAACTGCTTCGGACGACAATTCTGTTTGCACTTCGAAGCATTTCGCTTAGGAACAGCACCTGTTTACATGGCATTCCTCCGGTTCATGGGAGACGATGACGATGCAAAACAATTTTCTTACAGTCTGGAAGTTGGTGGAAATGGAAGAAAACTCATCTGGCAAGGTATTCCTAGAAGTATCCGCGATAGCCATCGGAAGGTTCGAGACAGTCACGATGGACTAATCATTCAGAGGAAGTTGGCACTATTCTGCTCTGGAAATGAGGGGATGGAACTGAAGTTAAAGGTTACAGGGCGAATATGGAGAGTAAGAGTCTTCACCGGCTTAAACCCTAAACCCTGTGGAGTTGGCGTAGTGGGAAGGAAGAAAACCGCCGAACAAATGCTGATTACTCGAAAGCTTTCTGCTTCGAACCTCAAATCCTTTCTTTCTCTGCGTTTCGTTTCCCCTTCTCTGACTTCGCACTTGTTTTCTTCACCTCTCTGCTTAAACCCACCAATCCTTTGCCCACTTCCTCCCACTCTTTCGCCGTCTTTCTCTTCCAAACCCACACCTCCAGAAGCTTCCAACCTCACCCGCGATGGCAACTACGACGAAGCCACTTCCCGATTCTCCCTCGTCTGCCCTGGCTGTGGAGTTCACATGCAAGACACCAATCCCAAACATCCTGGCTTCTTCGTCAAACCCTCGAGAAAAGATTCCAATTATCGCTTACTTACCCATCTTGTCCCCGTCCATGATGAATCTGAATGCTCCGAATTTCTCAAGAGAGGCCTAATAATCGAGCCAGATAATCAGAAAACTGAAGAGAATGTGACCGAGAAACCCCACAAGCCGACCGTGTGTTCGCGGTGCCACTCATTGAGGCATTATGGGAAGGTAAAGGATCCTTCAGTAGAGAATTTACTGCCGGATTTTGATTTCGATCATACCATCGGTAGGAGACTGGCGTCGACTTCGGGAACCCGATCTGTTGTTCTGATCGTCGTTGATGCTGCAGATTTTGATGGGTCATTCCCAAAGAAGGTAGCGAACTTGGTCTCGGCCACTATTGAGGATAATTCAGCTGCCTGGAAACAGGGGAAATCAGGGAATGTGCCTAGAGTGGTGCTTGTAGTGACAAAAATTGATCTGCTGCCTAGCTCTTTATCACCGACGAGATTTGAGCATTGGGTGAGGCAGAGAGCGAGGGAGGGAGGGATTAACAAGATAACGAGTTTGCATATGGTGAGTGCGGTTAGAGATTGGGGGCTGAAAAATTTGGTGGAGGATGTAATTGAATTGGTTGGGGCGAGAGGAAATGTGTGGGCAATTGGAGCACAAAATGCTGGGAAAAGCACGCTGATTAATTCAATAGGAAAGCATGTAGGTGGGAAGATTACGCAGTTGACTGAAGCACCAGTTCCTGGGACAACGTTGGGGATAATCAGAGTAGAGGGAATTTTTCCGGGTCAAGCCAAATTGTTTGATACTCCTGGGCTTCTCAATCCCCATCAGATTACTACGAGATTGACTAGGGAAGAGCAGAAACTTGTTCACATCAGCAAGGAATTGAAGCCCAGGACTTACAGGATTAAGGTTGGTCACACAATTCATGTTGCTGGCCTCATGAGGCTAGATGTGGAAGAAACAACTGTGGATACAATTTATGTTACGGTGTGGGCATCTCCTTATCTTCCATTACACATGGGGAAAACAGAAAATGCAACCAAAATACAGGAGGACCATTTTGGGAATCAATTGCAGCCACCTATAGGCAAAGATCGAGTTGCAGAACTTGGAAAATGGGTGAGAAGGGAATTTCGTGTTTGTGGAAGTAGTTGGGATTCAAGTTGTGTAGATGCTGCTGCTGCTGGCCTGGGTTGGTTCGCCATTGGACTAAAAGGCGAGGCAGTCTTGAGCATATGGACTTATGAGGGGATCGAGGTTGTTATACGAAGTTCTGTCATTCCTTACAGATCAAACTTCTTTGAAGATGCTGGATTTACAGTCTCGAAAATTGTCTCCAAGGCTGATCAGGTTGCAAATAAACCACATGATCAAAGCGAAAAGAAGAAGAAAAAGGGTGACCCCAAAGTTCGTGTGCTGACTGAGACGTCAGTATCGAAAGCTCGCTCCAAATATGATTCTGCTTAA 3240 46.27 MDPLKLSPRLLSPLSLALSFLLGLLAPWVPFSSSQLIGSLAFLGSPHGCAILGGYQFISEGCCMSMLEVEALLEELRDLEGGWSGPIPLLEVESDALEVIRPLNREVYFYVEIGVLIEGCSAALTSFPAFFLFDHSLTLQFFHLDDCMSTIEFREKGMYQQPKSREEHASSAASFCKEVTELRLASIDSQAATSRPEFKGVTFRKASTGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECRVTGDIPYLVMHLKDDHEVDMHDGCSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSHDGLIIQRKLALFCSGNEGMELKLKVTGRIWRVRVFTGLNPKPCGVGVVGRKKTAEQMLITRKLSASNLKSFLSLRFVSPSLTSHLFSSPLCLNPPILCPLPPTLSPSFSSKPTPPEASNLTRDGNYDEATSRFSLVCPGCGVHMQDTNPKHPGFFVKPSRKDSNYRLLTHLVPVHDESECSEFLKRGLIIEPDNQKTEENVTEKPHKPTVCSRCHSLRHYGKVKDPSVENLLPDFDFDHTIGRRLASTSGTRSVVLIVVDAADFDGSFPKKVANLVSATIEDNSAAWKQGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREGGINKITSLHMVSAVRDWGLKNLVEDVIELVGARGNVWAIGAQNAGKSTLINSIGKHVGGKITQLTEAPVPGTTLGIIRVEGIFPGQAKLFDTPGLLNPHQITTRLTREEQKLVHISKELKPRTYRIKVGHTIHVAGLMRLDVEETTVDTIYVTVWASPYLPLHMGKTENATKIQEDHFGNQLQPPIGKDRVAELGKWVRREFRVCGSSWDSSCVDAAAAGLGWFAIGLKGEAVLSIWTYEGIEVVIRSSVIPYRSNFFEDAGFTVSKIVSKADQVANKPHDQSEKKKKKGDPKVRVLTETSVSKARSKYDSA 1079
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38182634 38192917 + ClCG02G023800.2 Cla02g02306 268432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02306 1079 Pfam 50S ribosome-binding GTPase 803 878 IPR006073 GO:0005525
Cla02g02306 1079 SUPERFAMILY TRAF domain-like 277 468 - -
Cla02g02306 1079 MobiDBLite consensus disorder prediction 1041 1061 - -
Cla02g02306 1079 MobiDBLite consensus disorder prediction 1044 1061 - -
Cla02g02306 1079 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 332 IPR013083 -
Cla02g02306 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 692 872 IPR027417 -
Cla02g02306 1079 Gene3D - 681 867 IPR027417 -
Cla02g02306 1079 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 276 IPR013083 -
Cla02g02306 1079 CDD RING-HC_SIAHs 222 260 - -
Cla02g02306 1079 CDD YqeH 650 862 - -
Cla02g02306 1079 Pfam Seven in absentia protein family 266 465 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cla02g02306 1079 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 338 465 IPR008974 GO:0005515
Cla02g02306 1079 SUPERFAMILY RING/U-box 206 263 - -
Cla02g02306 1079 PANTHER GENETIC INTERACTOR OF PROHIBITINS 3, MITOCHONDRIAL 548 1046 - -
Cla02g02306 1079 ProSiteProfiles Zinc finger SIAH-type profile. 277 337 IPR013010 GO:0008270
Cla02g02306 1079 ProSiteProfiles Zinc finger RING-type profile. 224 260 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02306 Cla-Chr2:38182634 Cla04g00105 Cla-Chr4:3138412 7.63E-161 dispersed
Cla05g01150 Cla-Chr5:12245716 Cla02g02306 Cla-Chr2:38182634 9.76E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02306 - - cmax:111483924 1004.97