Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02339 ATGAGAAGATCAGGTGTAAACCAACCAAAAGTCAAGCGTCTTGTTGGAAAATACGAAATTGGTCGAACAATTGGTGAGGGTACATTTGCGAAAGTGAAAATTGCCAAAAATTCGGAGACTGGGGATCATGTAGCAATAAAGATTCTCGACAAAGAGAAAGTTCTGAAGCACAAGATGGCTGAACAGATCAAGCGGGAAATTGCCACAATGAAACTAATAAAGCATCCACATGTCGTCCAATTATTTGAGGTCATGGGGAGCAAAACCAAGATATTTATTGTTTTGGAATTTGTTACTGGAGGAGAACTTTTTGATAAAATTGTAAATCATGGACGGATGAGTGAAAATGAGGCACGGAGATATTTCCAGCAACTTATAAATGCTGTTGATTATTGTCATAGCAGGGGTGTTTACCACAGGGATCTTAAGCCAGAAAATCTATTGTTAGATGCCTACGGGAACCTTAAAGTGTCTGATTTTGGATTGAGTGCACTGTCACAACAAGTTAAGGATGATGGCCTGCTTCACACTACTTGTGGAACTCCAAACTATGTTGCTCCCGAGGTCCTTAAGGATAGAGGCTACGATGGTACAACTGCAGACTTATGGTCTTGTGGAGTTATACTCTTTGTACTGCTTGCAGGTTACTTGCCTTTTGATGATTCTAATCTCATCAACCTTTATAAAAAGATCTCGGCTGCTGAATTTACTTGTCCTCCGTGGCTTTCTTTAGATGCCATGAAATTGATAGCTCGAATTTTGGATCCCAACCCAATGACTCGCATCACTATACCTGAAATTTTGGAAGATGAATGGTTTAAGAAAGATTATAAGCCCCCTGTTTTTGAGGAGCCTAAGATTGCAAACTTGGATGATGTAGAAGCTGTCTTCAAAGATTCAGAAGAGCACCATGTGACAGAGAAGAAGGAAGAACACCCAGCAGCTATGAATGCCTTCGAGTTAATTTCAATGTCGAAAGGGCTCAACCTGGCAAATTTGTTTGGTACAGAACAGGAATTCAAGAGAGAAACAAGGTTCACCTCTAAATGCTCAGCTAATGAAATTGTAAATAAGATCGAAGAAGCTGCAAAACCTCTTGGTTTTGATGTACAAAAGAAAAATTACAAGATGAGGCTTGAAAATGTGAAAGCCGGTCGGAAGGGAAACCTTAATGTTGCCACAGAGATTCTGCAAGTTGCGCCTTCTGTCCATGTGGTTGAGATGAGAAAAGCAAAGGGAGACACTTTAGAGTTTCACAAGTTCTACAAAAACCTCTCCACCTCCCTGGAGGATGTTGTTTGGAAGACGGAGGAAGACATGCAGGAAACAAAGTGA 1335 40.6 MRRSGVNQPKVKRLVGKYEIGRTIGEGTFAKVKIAKNSETGDHVAIKILDKEKVLKHKMAEQIKREIATMKLIKHPHVVQLFEVMGSKTKIFIVLEFVTGGELFDKIVNHGRMSENEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLKDRGYDGTTADLWSCGVILFVLLAGYLPFDDSNLINLYKKISAAEFTCPPWLSLDAMKLIARILDPNPMTRITIPEILEDEWFKKDYKPPVFEEPKIANLDDVEAVFKDSEEHHVTEKKEEHPAAMNAFELISMSKGLNLANLFGTEQEFKRETRFTSKCSANEIVNKIEEAAKPLGFDVQKKNYKMRLENVKAGRKGNLNVATEILQVAPSVHVVEMRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMQETK 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38483633 38489028 + ClCG02G024170.2 Cla02g02339 268465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02339 444 Pfam Protein kinase domain 18 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g02339 444 SUPERFAMILY Protein kinase-like (PK-like) 14 301 IPR011009 -
Cla02g02339 444 Pfam NAF domain 313 372 IPR004041 GO:0007165
Cla02g02339 444 CDD STKc_SnRK3 17 272 - -
Cla02g02339 444 Gene3D Transferase(Phosphotransferase) domain 1 98 280 - -
Cla02g02339 444 Gene3D Kinase associated domain 1, KA1 310 435 - -
Cla02g02339 444 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 7 437 - -
Cla02g02339 444 CDD CIPK_C 317 431 - -
Cla02g02339 444 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Cla02g02339 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Cla02g02339 444 Gene3D Phosphorylase Kinase; domain 1 7 97 - -
Cla02g02339 444 ProSiteProfiles Protein kinase domain profile. 18 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g02339 444 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
Cla02g02339 444 SMART serkin_6 18 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g02339 444 PANTHER - 7 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02339 Cla-Chr2:38483633 Cla05g00055 Cla-Chr5:609156 0 dispersed
Cla02g02339 Cla-Chr2:38483633 Cla03g00613 Cla-Chr3:7315854 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80398 PF00069 Pkinase 7.70E-73 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02339 - - csv:101221173 873.233