Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02341 ATGGCTGTAACAGCCCCAGGGCAGCTCAACGTTAACGAGTCTCCTTCGTGGGGATCTAGAAGTGTCGACTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGGTCTGCTATTTGTGCCTATACCCTTCTCCGCCTTATTTTATTTATCCGCTGCGACATAGCTCATGTTCTAGCCCTAGGCGTGCAACAATTCCCTCTAAGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCACTGAAGAAAATACGAATGGACAATGAGAGGGAGGGGTTCCCTATTACTGCCATACGAGAAATCAAAATTTTAAAGAAGCTTCATCATGAAAATGTAATCAAGTTGAAAGAGATCGTGACATCTCCAGATGGTAATAAGTACAAAGGTGGAATCTACATGGTTTTTGAGTACATGGACCATGATTTGACTGGTCTTGCTGATCGTCCAGGGATGAGATTTTCAGTTCCTCAAATCAAGTGTTACATGAGGCAGCTTCTCACCGGGCTTCACTATTGTCATGTAAATCAAGTACTCCATAGAGATATAAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCATTTTCTAATGATCACAATGCAAATTTAACAAATCGTGTCATTACCTTATGGTACAGACCTCCTGAATTGCTGCTTGGGTCGACCAAATATGGTCCAGCTGTGGATATGTGGTCTGTTGGTTGTATCTTTGCAGAACTTCTACATGGGAAGCCAATATTCCCTGGGAAGGATGAGCCGGAGCAACTAAATAAGATCTTTGAGCTGTGTGGTGCTCCGGATGAAGTCAATTGGCCTGGAGTTTCTAAAATCCCTTGGTACAATAATTTCAAGCCCACAAGGCCGATGAAGAGACGTCTTAGAGAAGTTTTCCGGCATTTTGATCGTCATGCTCTAGAACTGTTGGAGAAGATGCTTACGCTCGATCCTTCTCAGAGGATATCTGCCAAGGATGCCCTAGATGCGGAGTATTTTTGGACGGATCCATTACCATGTGATCCTAAAAGTTTGCCTAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGCCAACAGCAACGACAACATGAAGAAACTGCAAAGCGACAGAAGTTGCAACATCCACAGCATGCACGCCTTCCACCTATTCAGCAATCGGGGCAATCACATGCACAGATGCGACCAGTGCCTAACCAACCAATTCATGGGTCTCAACAACCAGTTGCTGCAGGGCCTAGCCATCATTTTGGAAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCGGGTGGAAATCCCCCTTCTGGATACAACCACTCAAGTCGTGGTGGCGGTCAAGGTGGTTATGGTAACACACAATATGCTCAAGGACGAGGTGCTGCACCTTATGGGTCTGGTAACATGTCTGGTGCTGGTCCTCGAGGTGGAGCTGGAGGCAGCGGTGGTTATGGCGTGGGAGCTCCAAATTATCCACAGAATGGTCCATATCCTGGTAGTTCCGGTACTGGCCGTGGCTCCAATGTGATGGGTGGAAATCGCAACCAACAATATGGGTGGCAACAACAATGA 1620 45.99 MAVTAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGSAICAYTLLRLILFIRCDIAHVLALGVQQFPLSQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETAKRQKLQHPQHARLPPIQQSGQSHAQMRPVPNQPIHGSQQPVAAGPSHHFGKPRGPPGPGRYPGGNPPSGYNHSSRGGGQGGYGNTQYAQGRGAAPYGSGNMSGAGPRGGAGGSGGYGVGAPNYPQNGPYPGSSGTGRGSNVMGGNRNQQYGWQQQ 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38493991 38500011 - ClCG02G024190.2 Cla02g02341 268467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02341 539 SMART serkin_6 25 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g02341 539 Pfam Protein kinase domain 70 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g02341 539 MobiDBLite consensus disorder prediction 510 539 - -
Cla02g02341 539 MobiDBLite consensus disorder prediction 358 539 - -
Cla02g02341 539 PANTHER CELL DIVISION PROTEIN KINASE 70 473 - -
Cla02g02341 539 PANTHER CYCLIN-DEPENDENT KINASE C-2 5 40 - -
Cla02g02341 539 PANTHER CYCLIN-DEPENDENT KINASE C-2 70 473 - -
Cla02g02341 539 ProSiteProfiles Protein kinase domain profile. 25 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g02341 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Cla02g02341 539 CDD STKc_CDK9_like 25 347 - -
Cla02g02341 539 MobiDBLite consensus disorder prediction 360 389 - -
Cla02g02341 539 PANTHER CELL DIVISION PROTEIN KINASE 5 40 - -
Cla02g02341 539 Gene3D Transferase(Phosphotransferase) domain 1 145 387 - -
Cla02g02341 539 MobiDBLite consensus disorder prediction 396 423 - -
Cla02g02341 539 MobiDBLite consensus disorder prediction 451 470 - -
Cla02g02341 539 Gene3D Phosphorylase Kinase; domain 1 68 144 - -
Cla02g02341 539 SUPERFAMILY Protein kinase-like (PK-like) 70 355 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02341 Cla-Chr2:38493991 Cla10g01343 Cla-Chr10:28417520 2.53E-139 dispersed
Cla11g01359 Cla-Chr11:27088155 Cla02g02341 Cla-Chr2:38493991 4.27E-88 dispersed
Cla11g01852 Cla-Chr11:32061152 Cla02g02341 Cla-Chr2:38493991 4.83E-71 dispersed
Cla02g02341 Cla-Chr2:38493991 Cla03g01582 Cla-Chr3:31590266 1.39E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80400 PF00069 Pkinase 8.00E-70 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02341 K08819 - csv:101220936 935.25