Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla02g02341 | ATGGCTGTAACAGCCCCAGGGCAGCTCAACGTTAACGAGTCTCCTTCGTGGGGATCTAGAAGTGTCGACTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGGTCTGCTATTTGTGCCTATACCCTTCTCCGCCTTATTTTATTTATCCGCTGCGACATAGCTCATGTTCTAGCCCTAGGCGTGCAACAATTCCCTCTAAGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCACTGAAGAAAATACGAATGGACAATGAGAGGGAGGGGTTCCCTATTACTGCCATACGAGAAATCAAAATTTTAAAGAAGCTTCATCATGAAAATGTAATCAAGTTGAAAGAGATCGTGACATCTCCAGATGGTAATAAGTACAAAGGTGGAATCTACATGGTTTTTGAGTACATGGACCATGATTTGACTGGTCTTGCTGATCGTCCAGGGATGAGATTTTCAGTTCCTCAAATCAAGTGTTACATGAGGCAGCTTCTCACCGGGCTTCACTATTGTCATGTAAATCAAGTACTCCATAGAGATATAAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCATTTTCTAATGATCACAATGCAAATTTAACAAATCGTGTCATTACCTTATGGTACAGACCTCCTGAATTGCTGCTTGGGTCGACCAAATATGGTCCAGCTGTGGATATGTGGTCTGTTGGTTGTATCTTTGCAGAACTTCTACATGGGAAGCCAATATTCCCTGGGAAGGATGAGCCGGAGCAACTAAATAAGATCTTTGAGCTGTGTGGTGCTCCGGATGAAGTCAATTGGCCTGGAGTTTCTAAAATCCCTTGGTACAATAATTTCAAGCCCACAAGGCCGATGAAGAGACGTCTTAGAGAAGTTTTCCGGCATTTTGATCGTCATGCTCTAGAACTGTTGGAGAAGATGCTTACGCTCGATCCTTCTCAGAGGATATCTGCCAAGGATGCCCTAGATGCGGAGTATTTTTGGACGGATCCATTACCATGTGATCCTAAAAGTTTGCCTAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGCCAACAGCAACGACAACATGAAGAAACTGCAAAGCGACAGAAGTTGCAACATCCACAGCATGCACGCCTTCCACCTATTCAGCAATCGGGGCAATCACATGCACAGATGCGACCAGTGCCTAACCAACCAATTCATGGGTCTCAACAACCAGTTGCTGCAGGGCCTAGCCATCATTTTGGAAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCGGGTGGAAATCCCCCTTCTGGATACAACCACTCAAGTCGTGGTGGCGGTCAAGGTGGTTATGGTAACACACAATATGCTCAAGGACGAGGTGCTGCACCTTATGGGTCTGGTAACATGTCTGGTGCTGGTCCTCGAGGTGGAGCTGGAGGCAGCGGTGGTTATGGCGTGGGAGCTCCAAATTATCCACAGAATGGTCCATATCCTGGTAGTTCCGGTACTGGCCGTGGCTCCAATGTGATGGGTGGAAATCGCAACCAACAATATGGGTGGCAACAACAATGA | 1620 | 45.99 | MAVTAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGSAICAYTLLRLILFIRCDIAHVLALGVQQFPLSQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETAKRQKLQHPQHARLPPIQQSGQSHAQMRPVPNQPIHGSQQPVAAGPSHHFGKPRGPPGPGRYPGGNPPSGYNHSSRGGGQGGYGNTQYAQGRGAAPYGSGNMSGAGPRGGAGGSGGYGVGAPNYPQNGPYPGSSGTGRGSNVMGGNRNQQYGWQQQ | 539 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 38493991 | 38500011 | - | ClCG02G024190.2 | Cla02g02341 | 268467 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla02g02341 | 539 | SMART | serkin_6 | 25 | 347 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla02g02341 | 539 | Pfam | Protein kinase domain | 70 | 347 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla02g02341 | 539 | MobiDBLite | consensus disorder prediction | 510 | 539 | - | - | |
Cla02g02341 | 539 | MobiDBLite | consensus disorder prediction | 358 | 539 | - | - | |
Cla02g02341 | 539 | PANTHER | CELL DIVISION PROTEIN KINASE | 70 | 473 | - | - | |
Cla02g02341 | 539 | PANTHER | CYCLIN-DEPENDENT KINASE C-2 | 5 | 40 | - | - | |
Cla02g02341 | 539 | PANTHER | CYCLIN-DEPENDENT KINASE C-2 | 70 | 473 | - | - | |
Cla02g02341 | 539 | ProSiteProfiles | Protein kinase domain profile. | 25 | 347 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla02g02341 | 539 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 182 | 194 | IPR008271 | GO:0004672|GO:0006468 | |
Cla02g02341 | 539 | CDD | STKc_CDK9_like | 25 | 347 | - | - | |
Cla02g02341 | 539 | MobiDBLite | consensus disorder prediction | 360 | 389 | - | - | |
Cla02g02341 | 539 | PANTHER | CELL DIVISION PROTEIN KINASE | 5 | 40 | - | - | |
Cla02g02341 | 539 | Gene3D | Transferase(Phosphotransferase) domain 1 | 145 | 387 | - | - | |
Cla02g02341 | 539 | MobiDBLite | consensus disorder prediction | 396 | 423 | - | - | |
Cla02g02341 | 539 | MobiDBLite | consensus disorder prediction | 451 | 470 | - | - | |
Cla02g02341 | 539 | Gene3D | Phosphorylase Kinase; domain 1 | 68 | 144 | - | - | |
Cla02g02341 | 539 | SUPERFAMILY | Protein kinase-like (PK-like) | 70 | 355 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g02341 | Cla-Chr2:38493991 | Cla10g01343 | Cla-Chr10:28417520 | 2.53E-139 | dispersed | |
Cla11g01359 | Cla-Chr11:27088155 | Cla02g02341 | Cla-Chr2:38493991 | 4.27E-88 | dispersed | |
Cla11g01852 | Cla-Chr11:32061152 | Cla02g02341 | Cla-Chr2:38493991 | 4.83E-71 | dispersed | |
Cla02g02341 | Cla-Chr2:38493991 | Cla03g01582 | Cla-Chr3:31590266 | 1.39E-103 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80400 | PF00069 | Pkinase | 8.00E-70 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla02g02341 | K08819 | - | csv:101220936 | 935.25 |