Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02350 ATGCGGAAAGTAAAGAAAAAGAAACCCATTTATAATTATTCTTCTTTTTTTCTTTTTTTTCCGGCTGCATCCGCATCTCCCAAGAACCGCAACCATCGAAGCCCTGTGATCCGATTCTTCTCTCTTCCTTTGGAAATGCCGACCAGTTTGGTCCCTTCTCACAGACCGGAGCTTCTCACCGTCGCCGTCGCTGTGGTTGCTGTCGGCGTTGCCACTGCCTACTATTTCTATATCACCAAGAAATCCAAACCCAAAGGTTGCTTGGACCCTAATAACTTCAAGGAATTTAAACTAGTTAAACGCACACAGCTTAGCCATAATGTAGCAAAGTTCAGATTCTCTCTTCCGACGCCAACCTCAATTTTGGGTCTGCCGATTGGGCAGCATATCAGCTGCAGAGGAAAAGATAGCGAAGGTGGAGATGTTGTGAAACCTTACACTCCAACCACTTTGGACACAGATGTTGGATACTTTGATTTGGTCATAAAGATGTATCCACAAGGAAGGATGTCCCACCACTTCCGTGAGATGCGTGAAGGTGATTGCTTGGCTGTGAAAGGTCCAAAGGGACGATTCAAGTATGCACCTAACGAAGTTGAGGCCTATGGAATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTGCAAGAGCAATACTAGAAAACCCAGTGGATCACACCAATGTGCATCTTATATATGCTAATGTAACTTATGAAGACATTCTGCTAAAGGAAGAATTGGATAGTCTTGCGGCTAGGTTTCCCACCCGCTTTACTATCTACTATGTGCTCAATCAGCCTCCTGAAGGATGGGATGGTGGTGTTGGCTTCATAACTGAGGAAATGATACGACTACACTGTCCTGCGCCATCCCCTAATGTTCGGATTTTGAGGTGCGGGCCACCCCCCATGAACAAAGCTATGGCTGCTTACCTCAACACTATTGGCCATCCTCCCCAAATGCAGTTCCTGTTCTAA 984 46.04 MRKVKKKKPIYNYSSFFLFFPAASASPKNRNHRSPVIRFFSLPLEMPTSLVPSHRPELLTVAVAVVAVGVATAYYFYITKKSKPKGCLDPNNFKEFKLVKRTQLSHNVAKFRFSLPTPTSILGLPIGQHISCRGKDSEGGDVVKPYTPTTLDTDVGYFDLVIKMYPQGRMSHHFREMREGDCLAVKGPKGRFKYAPNEVEAYGMLAGGTGITPMFQVARAILENPVDHTNVHLIYANVTYEDILLKEELDSLAARFPTRFTIYYVLNQPPEGWDGGVGFITEEMIRLHCPAPSPNVRILRCGPPPMNKAMAAYLNTIGHPPQMQFLF 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38558643 38561638 - ClCG02G024270.2 Cla02g02350 268476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02350 327 PRINTS Cytochrome B5 reductase signature 122 133 - -
Cla02g02350 327 PRINTS Cytochrome B5 reductase signature 144 151 - -
Cla02g02350 327 PRINTS Cytochrome B5 reductase signature 180 194 - -
Cla02g02350 327 PRINTS Cytochrome B5 reductase signature 203 222 - -
Cla02g02350 327 PRINTS Cytochrome B5 reductase signature 241 252 - -
Cla02g02350 327 PRINTS Cytochrome B5 reductase signature 297 305 - -
Cla02g02350 327 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 91 195 IPR017927 GO:0016491
Cla02g02350 327 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 203 222 IPR001709 GO:0016491
Cla02g02350 327 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 241 252 IPR001709 GO:0016491
Cla02g02350 327 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 297 305 IPR001709 GO:0016491
Cla02g02350 327 PANTHER NADH-CYTOCHROME B5 REDUCTASE 52 327 - -
Cla02g02350 327 Pfam Oxidoreductase NAD-binding domain 204 310 IPR001433 GO:0016491
Cla02g02350 327 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 183 322 IPR039261 -
Cla02g02350 327 Pfam Oxidoreductase FAD-binding domain 96 194 IPR008333 -
Cla02g02350 327 Gene3D - 184 327 IPR039261 -
Cla02g02350 327 PANTHER NADH-CYTOCHROME B5 REDUCTASE 52 327 IPR001834 GO:0016491
Cla02g02350 327 CDD cyt_b5_reduct_like 96 327 - -
Cla02g02350 327 Gene3D Translation factors 83 183 - -
Cla02g02350 327 SUPERFAMILY Riboflavin synthase domain-like 87 197 IPR017938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02350 Cla-Chr2:38558643 Cla10g01589 Cla-Chr10:31371780 1.46E-144 dispersed
Cla02g02350 Cla-Chr2:38558643 Cla11g01515 Cla-Chr11:28795757 8.06E-49 transposed
Cla02g02350 Cla-Chr2:38558643 Cla03g00880 Cla-Chr3:12117206 1.28E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02350 K00326 - csv:101219272 503.827