Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02350 ATGCGGAAAGTAAAGAAAAAGAAACCCATTTATAATTATTCTTCTTTTTTTCTTTTTTTTCCGGCTGCATCCGCATCTCCCAAGAACCGCAACCATCGAAGCCCTGTGATCCGATTCTTCTCTCTTCCTTTGGAAATGCCGACCAGTTTGGTCCCTTCTCACAGACCGGAGCTTCTCACCGTCGCCGTCGCTGTGGTTGCTGTCGGCGTTGCCACTGCCTACTATTTCTATATCACCAAGAAATCCAAACCCAAAGGTTGCTTGGACCCTAATAACTTCAAGGAATTTAAACTAGTTAAACGCACACAGCTTAGCCATAATGTAGCAAAGTTCAGATTCTCTCTTCCGACGCCAACCTCAATTTTGGGTCTGCCGATTGGGCAGCATATCAGCTGCAGAGGAAAAGATAGCGAAGGTGGAGATGTTGTGAAACCTTACACTCCAACCACTTTGGACACAGATGTTGGATACTTTGATTTGGTCATAAAGATGTATCCACAAGGAAGGATGTCCCACCACTTCCGTGAGATGCGTGAAGGTGATTGCTTGGCTGTGAAAGGTCCAAAGGGACGATTCAAGTATGCACCTAACGAAGTTGAGGCCTATGGAATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTGCAAGAGCAATACTAGAAAACCCAGTGGATCACACCAATGTGCATCTTATATATGCTAATGTAACTTATGAAGACATTCTGCTAAAGGAAGAATTGGATAGTCTTGCGGCTAGGTTTCCCACCCGCTTTACTATCTACTATGTGCTCAATCAGCCTCCTGAAGGATGGGATGGTGGTGTTGGCTTCATAACTGAGGAAATGATACGACTACACTGTCCTGCGCCATCCCCTAATGTTCGGATTTTGAGGTGCGGGCCACCCCCCATGAACAAAGCTATGGCTGCTTACCTCAACACTATTGGCCATCCTCCCCAAATGCAGTTCCTGTTCTAA 984 46.04 MRKVKKKKPIYNYSSFFLFFPAASASPKNRNHRSPVIRFFSLPLEMPTSLVPSHRPELLTVAVAVVAVGVATAYYFYITKKSKPKGCLDPNNFKEFKLVKRTQLSHNVAKFRFSLPTPTSILGLPIGQHISCRGKDSEGGDVVKPYTPTTLDTDVGYFDLVIKMYPQGRMSHHFREMREGDCLAVKGPKGRFKYAPNEVEAYGMLAGGTGITPMFQVARAILENPVDHTNVHLIYANVTYEDILLKEELDSLAARFPTRFTIYYVLNQPPEGWDGGVGFITEEMIRLHCPAPSPNVRILRCGPPPMNKAMAAYLNTIGHPPQMQFLF 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38558643 38561638 - ClCG02G024270.2 Cla02g02350 268476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02350 327 PRINTS Cytochrome B5 reductase signature 122 133 - -
Cla02g02350 327 PRINTS Cytochrome B5 reductase signature 144 151 - -
Cla02g02350 327 PRINTS Cytochrome B5 reductase signature 180 194 - -
Cla02g02350 327 PRINTS Cytochrome B5 reductase signature 203 222 - -
Cla02g02350 327 PRINTS Cytochrome B5 reductase signature 241 252 - -
Cla02g02350 327 PRINTS Cytochrome B5 reductase signature 297 305 - -
Cla02g02350 327 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 91 195 IPR017927 GO:0016491
Cla02g02350 327 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 203 222 IPR001709 GO:0016491
Cla02g02350 327 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 241 252 IPR001709 GO:0016491
Cla02g02350 327 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 297 305 IPR001709 GO:0016491
Cla02g02350 327 PANTHER NADH-CYTOCHROME B5 REDUCTASE 52 327 - -
Cla02g02350 327 Pfam Oxidoreductase NAD-binding domain 204 310 IPR001433 GO:0016491
Cla02g02350 327 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 183 322 IPR039261 -
Cla02g02350 327 Pfam Oxidoreductase FAD-binding domain 96 194 IPR008333 -
Cla02g02350 327 Gene3D - 184 327 IPR039261 -
Cla02g02350 327 PANTHER NADH-CYTOCHROME B5 REDUCTASE 52 327 IPR001834 GO:0016491
Cla02g02350 327 CDD cyt_b5_reduct_like 96 327 - -
Cla02g02350 327 Gene3D Translation factors 83 183 - -
Cla02g02350 327 SUPERFAMILY Riboflavin synthase domain-like 87 197 IPR017938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02350 K00326 CYB5R; cytochrome-b5 reductase [EC:1.6.2.2] - csv:101219272 503.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02350 Cla-Chr2:38558643 Cla10g01589 Cla-Chr10:31371780 1.46E-144 dispersed
Cla02g02350 Cla-Chr2:38558643 Cla11g01515 Cla-Chr11:28795757 8.06E-49 transposed
Cla02g02350 Cla-Chr2:38558643 Cla03g00880 Cla-Chr3:12117206 1.28E-48 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g00023 . 1 134 NADPH P450 reductases AT5G53560 79.1 3.4e-59 224.6
Cla05g00353 . 106 238 NADPH P450 reductases AT5G53560 68.4 1.5e-51 199.1
Cla06g00745 . 31 134 NADPH P450 reductases AT5G53560 67.3 4.8e-37 151.0
Cla05g00353 . 106 237 NADPH P450 reductases AT5G48810 64.9 8.2e-48 186.8
Cla01g00023 . 1 134 NADPH P450 reductases AT5G48810 59.6 6.5e-45 177.2
Cla05g00353 . 127 238 NADPH P450 reductases AT2G32720 84.8 7.6e-51 196.8
Cla06g00745 . 3 134 NADPH P450 reductases AT2G32720 69.2 4.3e-46 181.0
Cla01g00023 . 22 133 NADPH P450 reductases AT2G32720 67.0 2.1e-40 162.2
Cla10g01589 . 2 280 NADPH P450 reductases AT5G17770 78.1 7.9e-127 450.3
Cla02g02350 . 55 327 NADPH P450 reductases AT5G17770 73.3 3.7e-116 414.8
Cla04g00515 . 2 372 NADPH P450 reductases AT5G17770 59.6 8.8e-110 393.7
Cla01g00023 . 1 134 NADPH P450 reductases AT5G53560 79.1 3.4e-59 224.6
Cla05g00353 . 106 238 NADPH P450 reductases AT5G53560 68.4 1.5e-51 199.1
Cla06g00745 . 31 134 NADPH P450 reductases AT5G53560 67.3 4.8e-37 151.0
Cla05g00353 . 106 237 NADPH P450 reductases AT5G48810 64.9 8.2e-48 186.8
Cla01g00023 . 1 134 NADPH P450 reductases AT5G48810 59.6 6.5e-45 177.2
Cla05g00353 . 127 238 NADPH P450 reductases AT2G32720 84.8 7.6e-51 196.8
Cla06g00745 . 3 134 NADPH P450 reductases AT2G32720 69.2 4.3e-46 181.0
Cla01g00023 . 22 133 NADPH P450 reductases AT2G32720 67.0 2.1e-40 162.2
Cla10g01589 . 2 280 NADPH P450 reductases AT5G17770 78.1 7.9e-127 450.3
Cla02g02350 . 55 327 NADPH P450 reductases AT5G17770 73.3 3.7e-116 414.8
Cla04g00515 . 2 372 NADPH P450 reductases AT5G17770 59.6 8.8e-110 393.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86