Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02368 ATGGAGGAGTTAATTGCAACGAGATATTGGTGTCACATGTGTTCTCAAATGGTGAATCCCATCGTTGATGTGGAAATTAAATGCCCCTTCTGCCGTAGCGGCTTTGTTGAGGAGATAGGTAACGGTATTTCTAGCGACAATAATGATAACAACAACAACAACAACAATAATGAGCTTGAATCCCATTTTGGTTCGGAGCGAGCTTTGTCCCTCTGGGCTCCGATCTTGCTCGGTATGATGGGAAATCCCCGTGGGCGCCGAAGATTCAGGCATCTAGAGTTTGACGAAGATGATGATGATAATGAGCATGAGGATGGGGAGGGGAATCGTGTGAGTAGTGAGCCGACTGAGCTTGATTCAGTCATTAGGAGGAGGAGAAGTTCAGCTACCATTCTTCAGTTGCTCCAAGGTATCAGAGCTGGAATGGCAACTGCTGAATCAGAGAATAGTTACGAGGGAGAGAGGAGCAGAGAAAGAGAGCGGGTTATTCTTATAAATCCTTTCAATCAGACCATTGTAGTTCAAGGAGGTGAGAATCAAAATCAAAACCCCATTGGGTCGCTGGGTGATTATTTCGTAGGACCTGGTTTGGATTTGTTATTGCAACATCTAGCCGAAAATGATCCCAACAGATATGGGACTCCACCTGCACAGAAGGAGGCCGTTGATGCGCTGCCCACCGTGAGGGTTGAAATTCAGGATAGCCGTTTGCAATGTTCAGTGTGTTTGGATGAGTTTGAGGTGGATGAAGAAGCCAAGGAGATGCCATGTAAGCATAAATTTCATACAGGTTGTATTCTGCCATGGCTGGAGCTGCATAGTTCTTGCCCAGTTTGTAGGCATCAATTGCCTGGGGATGAATCCAAGCGTGATCCGGATGGTGGGTCTGCTAGGTTCATGGGCGACCTTAGTAATAATGCTAATGCTGGTAGTGACAGCGGGGAGATTGATGGGAGAAATGCATCTGGGACTGGGAGAAGGTTTTCTTTTCCGTGGCCCTTCAATGGCTTGTTTTCTTCGCAAGGAAACTCCTCGGGTGGAAGTGCATCTGATTCTCATTCTCAAAGGGACCACACTTCCATTTGA 1086 46.69 MEELIATRYWCHMCSQMVNPIVDVEIKCPFCRSGFVEEIGNGISSDNNDNNNNNNNNELESHFGSERALSLWAPILLGMMGNPRGRRRFRHLEFDEDDDDNEHEDGEGNRVSSEPTELDSVIRRRRSSATILQLLQGIRAGMATAESENSYEGERSRERERVILINPFNQTIVVQGGENQNQNPIGSLGDYFVGPGLDLLLQHLAENDPNRYGTPPAQKEAVDALPTVRVEIQDSRLQCSVCLDEFEVDEEAKEMPCKHKFHTGCILPWLELHSSCPVCRHQLPGDESKRDPDGGSARFMGDLSNNANAGSDSGEIDGRNASGTGRRFSFPWPFNGLFSSQGNSSGGSASDSHSQRDHTSI 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38732677 38733762 - ClCG02G024470.1 Cla02g02368 268494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02368 361 MobiDBLite consensus disorder prediction 339 361 - -
Cla02g02368 361 SMART ring_2 239 279 IPR001841 -
Cla02g02368 361 SUPERFAMILY RING/U-box 232 285 - -
Cla02g02368 361 MobiDBLite consensus disorder prediction 283 324 - -
Cla02g02368 361 MobiDBLite consensus disorder prediction 95 123 - -
Cla02g02368 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 286 IPR013083 -
Cla02g02368 361 ProSiteProfiles Zinc finger RING-type profile. 239 280 IPR001841 -
Cla02g02368 361 Pfam zinc-ribbon 7 39 IPR039525 GO:0061630
Cla02g02368 361 MobiDBLite consensus disorder prediction 301 318 - -
Cla02g02368 361 Pfam Ring finger domain 238 280 IPR001841 -
Cla02g02368 361 MobiDBLite consensus disorder prediction 105 123 - -
Cla02g02368 361 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 338 - -
Cla02g02368 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 338 - -
Cla02g02368 361 CDD RING-H2_RNF181 238 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02368 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - csv:101216515 549.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01465 Cla-Chr1:29194182 Cla02g02368 Cla-Chr2:38732677 2.92E-46 dispersed
Cla02g02368 Cla-Chr2:38732677 Cla11g01527 Cla-Chr11:28904384 1.76E-32 dispersed
Cla02g02368 Cla-Chr2:38732677 Cla10g01524 Cla-Chr10:30533282 1.39E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g12 . . . . Bpe01g00362 . . . . . . . . . . Cpe05g00568 . . . . . . . . Cla02g02368 Cam02g2519 Cec02g2566 Cco02g2595 Clacu02g2493 Cmu02g2424 Cre02g2742 . . . . . . Chy05g00006 Cme05g00008 Blo08g00158 Blo14g00331 . . . . Bma07g00317 Bma11g00345 . Cmo02g01194 Cmo20g00005 Cma02g01160 Cma20g00005 Car02g00960 Car20g00003 Cpe16g00943 . Bhi10g00490 Tan07g0562 . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006217 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 0 1 1 1 1 1 2 1 38