Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00002 ATGTGTCGATCACATGAGGAATGGGCTTATGTAGCCCTTCTTCTCCTCTGCTTCTCCTCGTCCTTACTAATTGTCGGTGCAGCAGAGATGGTTACCCATCCTTCTGAAGTGGACGCTTTGCTAGTCATCAAAAGAAGTTTGATCGACCCTAATGGAAATCTGAGCAACTGGAACAAAGGAGACCCTTGTAATTCAAACTGGACTGGTGTTCTGTGCTACAATACCACATTGGATGATAACTATCTACATGTTGCTGAATTGCAACTTCTAAATATGAGTTTATCAGGAAATTTGTCACCTGCGCTTGGTCGTTTATCTTACCTGAAAGTTTTGGACTTTATGTGGAATGAGATAAATGGGGAAATACCAAGAGAGATAGGCAACCTAACATCCTTAGAACTGTTGCTTCTGAACGGGAACCAGTTGTCAGGTCCATTACCTGAAGATCTTGGTAATCTTCTACATTTGGACAGAATACAGATTGACCAGAACCATATATCAGGACCAATACCCAAGTCTTTTGCAAACTTAAAAGCAACAAAGCATTTTCACATGAATAACAACTCTATCAGTGGTGAAATCCCATCTGAGCTATCTGGATTGCCCAATCTTGTCCACTTCCTTCTTGACAATAACAACTTATCGGGGAAACTTCCACCTGAGTTGTTTCAATTGCCAAACTTAGAAATACTTCAACTTGACAACAACAACTTTAGTGGGACCACAATACCAGATTCTTATGGAAATATGACTAAATTGCTGAAATTGAGTCTAAGGAACTGTACCTTGCAAGGATCCATTCCAGATCTGAGCAGAATAAAGAACCTCGGTTATCTAGATCTAAGTTCCAATCAATTAAGTGGATTGATACCACGAAGTAAACTCTCTGAGAATATCACAACCATCATTTTATCCAACAACCATCTTACCGGCACCATACCATCCAGCCTTTCGGATCTACCACATCTTCAGAAATTGTCAGTTGCAAATAATTCATTGAACGGCTCTGTTCCATCCACCATATGGCAAAGCAGGACGCTCAATCCTCTGGACAGCCTTACAATAGAGTTGCAGAACAATAATTTTTCAAATATTGTGGGAAGCATCCATCTTCCTCTGAATGTTTCTGTCTGGCTTCATGGAAATCCTGCTTGTGCTAATAACAGCCTGCTGGACTTTTGTGGATCTGAGAGTGAGGATATAATTGACGTACCAACAAATAACACTCTTGGCTGTTCTGGCTCAATATGTCCACCTTCTTACGAATGTTACGCGGCGAAATGTCCCTCATCTTGTCTCTGTTCTGCACCTCTTCTAATTGGATATCGTTTGAAAAGTCCTGGATTCTCACGTTTCAGTCCATATCAACAAATGTTTGAGGAGTATCTGACCAGTGGTCTTAAGGTACATCTTGAACAGTTGGACATTGGTTCTCCTGTGTGGGAAAAAGGACCTCGATTAAGAATGAACCTGAAGCTTTTCCCTCTGTATGTTGCTGATAGCAATAGTTCTCACATGTTCAATGACAGCGAGGTTTTACGAATTGTTTCCAAGTTTACAAATTGGAAAATTCAAGATAGCGATATATTTGGACCATATGAACTTCTCAGCTTGTCAATATCAGATGTTTATAAGAACGTATTTGTCACACCATCATCTGATTCTACTATAAGTAAAGGGGCATTGGCTGGAATAATATTAGGAGCAATTGCTGGCGGAGCAATGTTATCTGCAGTTGTTTTTATTTTTATTATCAGATCACGTGTGAGAGGCCACCACATCTCAAGAAGGCGTCATCTGTCAAAAACCTCCATAAAGATTGAGGGCGTAAAGGAATTTGGTTACCGTGAAATGGCCCTAGCTACAAACAATTTTCATTATTCCACGGTAGTTGGTCAAGGTGGTTATGGAAAGGTTTACAAAGGAATTCTAGCAGATAGCACAACTGTTGCTATCAAACGTGCACAGGAGGGCTCACTACAGGGTGAAAAAGAGTTCCTAACTGAAATACAATTATTGTCAAGGTTACACCACCGAAATCTTGTGGCTTTGATTGGCTATTGCGATGAGGAAGGGGAGCAGATGTTGGCTTATGAGTTTATGTCAAATGGCACGCTGAGGGATCACCTTTCTGTCAATTCTGCAGAACCTTTGAGTTTTGCCACAAGATTAAAAGCTGCTCTGGGTGCAGCTAAGGGAATTCTGTACCTGCACACAGAAGCTGATCCTCCAATATTCCACCGAGATATCAAGTCCAGCAACATATTATTAGACTCTAAATATGTAGCAAAGGTTGCTGATTTTGGACTTTCACGACTTGCACCTCTACCCGATGCAGAAGGCGATGTGCCTGCTCATGTATCAACAGTAGTAAAAGGGACACCGGGTTATCTTGATCCAGAGTACTTTTTGACTCATAAATTGACAGATAAGAGTGATGTTTATAGCCTTGGGGTTGTGTTTTTGGAGCTTTTGACTGGGAGGCACCCAATCTCACATGGCAAGAACATCGTTAGGGAGGTTAACGGTGCATATCAGTCTGGAAAAATCTTCTCAATAATCGATGGTCGACTGGGATCTTATCCCGCTGAATGCGTAGAAAAATTTGTGACATTGGCGTTGAAGTGTTGCCAAGAAGATACGGATGCACGCCCTTCAATGGCTGAAGTTGTTCGAACGCTTGAAAGTATCTGGCTTATGCTGCCCGAGTCTGATACGAAAATTGCAGAGCCTTTGATCACGGATGTCATAAAAGTGACTGCCCCCCCATCTTCATCATCCAACATGAACAACTATTACATATCAGAAGTCTCTGGCAGTGACCTCGTAAGTGGAGTAACTCCGACCATCACGCCCAGATAG 2862 41.65 MCRSHEEWAYVALLLLCFSSSLLIVGAAEMVTHPSEVDALLVIKRSLIDPNGNLSNWNKGDPCNSNWTGVLCYNTTLDDNYLHVAELQLLNMSLSGNLSPALGRLSYLKVLDFMWNEINGEIPREIGNLTSLELLLLNGNQLSGPLPEDLGNLLHLDRIQIDQNHISGPIPKSFANLKATKHFHMNNNSISGEIPSELSGLPNLVHFLLDNNNLSGKLPPELFQLPNLEILQLDNNNFSGTTIPDSYGNMTKLLKLSLRNCTLQGSIPDLSRIKNLGYLDLSSNQLSGLIPRSKLSENITTIILSNNHLTGTIPSSLSDLPHLQKLSVANNSLNGSVPSTIWQSRTLNPLDSLTIELQNNNFSNIVGSIHLPLNVSVWLHGNPACANNSLLDFCGSESEDIIDVPTNNTLGCSGSICPPSYECYAAKCPSSCLCSAPLLIGYRLKSPGFSRFSPYQQMFEEYLTSGLKVHLEQLDIGSPVWEKGPRLRMNLKLFPLYVADSNSSHMFNDSEVLRIVSKFTNWKIQDSDIFGPYELLSLSISDVYKNVFVTPSSDSTISKGALAGIILGAIAGGAMLSAVVFIFIIRSRVRGHHISRRRHLSKTSIKIEGVKEFGYREMALATNNFHYSTVVGQGGYGKVYKGILADSTTVAIKRAQEGSLQGEKEFLTEIQLLSRLHHRNLVALIGYCDEEGEQMLAYEFMSNGTLRDHLSVNSAEPLSFATRLKAALGAAKGILYLHTEADPPIFHRDIKSSNILLDSKYVAKVADFGLSRLAPLPDAEGDVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGRHPISHGKNIVREVNGAYQSGKIFSIIDGRLGSYPAECVEKFVTLALKCCQEDTDARPSMAEVVRTLESIWLMLPESDTKIAEPLITDVIKVTAPPSSSSNMNNYYISEVSGSDLVSGVTPTITPR 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 56181 77097 - ClCG03G000020.2 Cla03g00002 268502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00002 953 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672|GO:0006468
Cla03g00002 953 CDD STKc_IRAK 631 897 - -
Cla03g00002 953 SMART serkin_6 625 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00002 953 Gene3D Ribonuclease Inhibitor 31 295 IPR032675 -
Cla03g00002 953 SMART LRR_typ_2 129 153 IPR003591 -
Cla03g00002 953 SMART LRR_typ_2 201 225 IPR003591 -
Cla03g00002 953 SMART LRR_typ_2 320 344 IPR003591 -
Cla03g00002 953 SMART LRR_typ_2 273 298 IPR003591 -
Cla03g00002 953 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Cla03g00002 953 Gene3D Phosphorylase Kinase; domain 1 596 700 - -
Cla03g00002 953 ProSiteProfiles Leucine-rich repeat profile. 275 296 IPR001611 GO:0005515
Cla03g00002 953 Pfam Leucine rich repeat 155 214 IPR001611 GO:0005515
Cla03g00002 953 SUPERFAMILY Protein kinase-like (PK-like) 611 923 IPR011009 -
Cla03g00002 953 ProSiteProfiles Protein kinase domain profile. 625 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00002 953 Gene3D Transferase(Phosphotransferase) domain 1 701 907 - -
Cla03g00002 953 SUPERFAMILY L domain-like 49 411 - -
Cla03g00002 953 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 930 - -
Cla03g00002 953 Gene3D Ribonuclease Inhibitor 296 383 IPR032675 -
Cla03g00002 953 Pfam Protein kinase domain 626 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00002 953 ProSitePatterns Protein kinases ATP-binding region signature. 631 653 IPR017441 GO:0005524
Cla03g00002 953 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 14 930 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00002 Cla-Chr3:56181 Cla04g00632 Cla-Chr4:20628995 0 dispersed
Cla05g01077 Cla-Chr5:11141462 Cla03g00002 Cla-Chr3:56181 2.58E-74 transposed
Cla03g00002 Cla-Chr3:56181 Cla04g00639 Cla-Chr4:20781889 7.69E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80402 PF00069 Pkinase 1.40E-47 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00002 - - csv:101208136 1718.36