Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00004 ATGGGGTTCGGGTTGAACAGAAGAGGAGAGGGGAAGAAATGGAAAAAAGAGAGAGAGAGGGTGGACGATTTGAATGTCACATTTAAACTTCGGGAAACCATGGGGAAATTGAGTTGCTCCTCAAGGCTGAAGTGGGAAAGAACCTGGATGGTCATAGAAAAGCCATGGGATGAGATACTTGAACACGAGAGTGGATTAATCCTCCTATACATTTTTGCAGGAACCATGGCAGATGAAGTTCAGAATGATGTGAATGATCAGGTGGCAGATATTGCCCCCTTTGATCCCACTAAGAAGAAGAAGAAGAAGAAGGTTGTGCTTCAGGATCCGACTGATGAGGTTGTTGATAAGTTAGCGGAGAAAACTGAAAGTTTGTCTGTTTCTGATGGTTTGGAGACTACCACATTTTCTGGACTTAAAAAGAAGAAGAAAAAACCAGTAGAGGCTAGCTCCTTGAATGATGATGGTGCAGATGCTACGGAGGATTTGGAAGATCAAGCGGGGGAAAATGAAGAGCGTGAGGGAATTGTTCTACAATATCGTTATCCTTGGGAGGGAAGTGATCGCGATTATGAATATGAGGAGCTTCTTGGACGGGTATTCAATATTCTTAGAGAGAATAATCCAGAACTTGCAGGCGATAGGCGTAGAACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTATGTAAAACGATGCACCGGCAGCCAGATCATGTTATGGCTTTCTTACTAGCCGAACTGGGAACCAGTGGCTCTCTTGATGGACAGCAGAGATTAGTTGTTAAAGGAAGGTTTGCACCAAAGAACTTCGAAGGAATTCTGCGTCGATACGTCAATGAATATGTGATTTGCATTGGGTGCAAGAGTCCGGACACTATCCTTTCAAAGGAGAACCGACTTTTCTTTCTCAGATGCGAGAAGGAATATGATTTACTGGCCATCGGTATTCTTTTCAATTTCACAAGCTTTTCGCATTCTTTCCCTTGGTTTTATCTTAAGGAATGTTTTATGTGTGATCAACAGTGTGGTTCTGGACGATCAGTTGCTCCAATTAAAGCTGGATTTGTGGCTCGTGTTGGCCGGAGGAACACTGGGACATGA 1140 43.25 MGFGLNRRGEGKKWKKERERVDDLNVTFKLRETMGKLSCSSRLKWERTWMVIEKPWDEILEHESGLILLYIFAGTMADEVQNDVNDQVADIAPFDPTKKKKKKKVVLQDPTDEVVDKLAEKTESLSVSDGLETTTFSGLKKKKKKPVEASSLNDDGADATEDLEDQAGENEEREGIVLQYRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICIGCKSPDTILSKENRLFFLRCEKEYDLLAIGILFNFTSFSHSFPWFYLKECFMCDQQCGSGRSVAPIKAGFVARVGRRNTGT 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 96912 104419 + ClCG03G000040.2 Cla03g00004 268504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00004 379 Gene3D - 188 322 - -
Cla03g00004 379 MobiDBLite consensus disorder prediction 155 169 - -
Cla03g00004 379 SMART eIF2Bneu4 215 358 IPR002735 GO:0003743|GO:0006413
Cla03g00004 379 Pfam Domain found in IF2B/IF5 215 319 IPR002735 GO:0003743|GO:0006413
Cla03g00004 379 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 76 320 IPR045196 GO:0003743|GO:0006413
Cla03g00004 379 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 349 379 IPR045196 GO:0003743|GO:0006413
Cla03g00004 379 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 294 319 IPR016190 GO:0003743|GO:0006413
Cla03g00004 379 MobiDBLite consensus disorder prediction 138 174 - -
Cla03g00004 379 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 190 297 IPR016189 GO:0003743|GO:0006413
Cla03g00004 379 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 BETA SUBUNIT 76 320 - -
Cla03g00004 379 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 BETA SUBUNIT 349 379 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00004 Cla-Chr3:96912 Cla08g01089 Cla-Chr8:23641067 3.51E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00004 K03238 - csv:101220978 502.286