Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla03g00004 | ATGGGGTTCGGGTTGAACAGAAGAGGAGAGGGGAAGAAATGGAAAAAAGAGAGAGAGAGGGTGGACGATTTGAATGTCACATTTAAACTTCGGGAAACCATGGGGAAATTGAGTTGCTCCTCAAGGCTGAAGTGGGAAAGAACCTGGATGGTCATAGAAAAGCCATGGGATGAGATACTTGAACACGAGAGTGGATTAATCCTCCTATACATTTTTGCAGGAACCATGGCAGATGAAGTTCAGAATGATGTGAATGATCAGGTGGCAGATATTGCCCCCTTTGATCCCACTAAGAAGAAGAAGAAGAAGAAGGTTGTGCTTCAGGATCCGACTGATGAGGTTGTTGATAAGTTAGCGGAGAAAACTGAAAGTTTGTCTGTTTCTGATGGTTTGGAGACTACCACATTTTCTGGACTTAAAAAGAAGAAGAAAAAACCAGTAGAGGCTAGCTCCTTGAATGATGATGGTGCAGATGCTACGGAGGATTTGGAAGATCAAGCGGGGGAAAATGAAGAGCGTGAGGGAATTGTTCTACAATATCGTTATCCTTGGGAGGGAAGTGATCGCGATTATGAATATGAGGAGCTTCTTGGACGGGTATTCAATATTCTTAGAGAGAATAATCCAGAACTTGCAGGCGATAGGCGTAGAACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTATGTAAAACGATGCACCGGCAGCCAGATCATGTTATGGCTTTCTTACTAGCCGAACTGGGAACCAGTGGCTCTCTTGATGGACAGCAGAGATTAGTTGTTAAAGGAAGGTTTGCACCAAAGAACTTCGAAGGAATTCTGCGTCGATACGTCAATGAATATGTGATTTGCATTGGGTGCAAGAGTCCGGACACTATCCTTTCAAAGGAGAACCGACTTTTCTTTCTCAGATGCGAGAAGGAATATGATTTACTGGCCATCGGTATTCTTTTCAATTTCACAAGCTTTTCGCATTCTTTCCCTTGGTTTTATCTTAAGGAATGTTTTATGTGTGATCAACAGTGTGGTTCTGGACGATCAGTTGCTCCAATTAAAGCTGGATTTGTGGCTCGTGTTGGCCGGAGGAACACTGGGACATGA | 1140 | 43.25 | MGFGLNRRGEGKKWKKERERVDDLNVTFKLRETMGKLSCSSRLKWERTWMVIEKPWDEILEHESGLILLYIFAGTMADEVQNDVNDQVADIAPFDPTKKKKKKKVVLQDPTDEVVDKLAEKTESLSVSDGLETTTFSGLKKKKKKPVEASSLNDDGADATEDLEDQAGENEEREGIVLQYRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICIGCKSPDTILSKENRLFFLRCEKEYDLLAIGILFNFTSFSHSFPWFYLKECFMCDQQCGSGRSVAPIKAGFVARVGRRNTGT | 379 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 96912 | 104419 | + | ClCG03G000040.2 | Cla03g00004 | 268504 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla03g00004 | 379 | Gene3D | - | 188 | 322 | - | - | |
Cla03g00004 | 379 | MobiDBLite | consensus disorder prediction | 155 | 169 | - | - | |
Cla03g00004 | 379 | SMART | eIF2Bneu4 | 215 | 358 | IPR002735 | GO:0003743|GO:0006413 | |
Cla03g00004 | 379 | Pfam | Domain found in IF2B/IF5 | 215 | 319 | IPR002735 | GO:0003743|GO:0006413 | |
Cla03g00004 | 379 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR | 76 | 320 | IPR045196 | GO:0003743|GO:0006413 | |
Cla03g00004 | 379 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR | 349 | 379 | IPR045196 | GO:0003743|GO:0006413 | |
Cla03g00004 | 379 | SUPERFAMILY | Zinc-binding domain of translation initiation factor 2 beta | 294 | 319 | IPR016190 | GO:0003743|GO:0006413 | |
Cla03g00004 | 379 | MobiDBLite | consensus disorder prediction | 138 | 174 | - | - | |
Cla03g00004 | 379 | SUPERFAMILY | Translation initiation factor 2 beta, aIF2beta, N-terminal domain | 190 | 297 | IPR016189 | GO:0003743|GO:0006413 | |
Cla03g00004 | 379 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 BETA SUBUNIT | 76 | 320 | - | - | |
Cla03g00004 | 379 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 BETA SUBUNIT | 349 | 379 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla03g00004 | Cla-Chr3:96912 | Cla08g01089 | Cla-Chr8:23641067 | 3.51E-06 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla03g00004 | K03238 | - | csv:101220978 | 502.286 |