Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00006 GAGAGCACTGGAGCAAGCAACAGGGTATACATCATCTGCTTGAATTTTTGTACGTCCAAGAGCTACACCATGGATCTTGTCCTGTTGGAGAAGGCTCTAGTGGGGATCTTCGTGGCCATGGTTGTTGCCATTAGCATATCCAAATTGAGGGGCAAGCGTTTTAAACTCCCACCAGGTCCCATTCCCATCCCCATATTTGGGAATTGGCTGCAGGTTGGGGATGACTTGAACCACCGCAACTTGACGGAGCTGGCCAAAAAGTTCGGTGACATATTGCTGTTGAGAATGGGGCAACGAAACTTGGTGGTGATTTCTTCACCAGAGTTGGCCAAGGAAGTGCTACACACCCAAGGAGTAGAATTTGGGTCTAGGACAAGAAACGTGGTGTTCGATATCTTCACAGATAAGGGTCAAGATATGGTGTTCACGGTGTACGGCAAGCACTGGATGAAAATGAGGCGAATCATGACCATTCCTTTTTTCACCAATAAGGTGGTTCAGCAGAACAGGTTTAGTTGGGAGGACGAGGCTGCCAGAGTTGTGGAGGATCTAAAGAATAACCCAGAAGCCTCAACCACCGGCGTGGTTCTGAGGAAGCGGCTACAGCTTCTAATGTATAACAATATGTACAGAATGATGTTTGACAAGAGATTCGACAGCATGGAAGACCCTCTGTTCAATAACCTTAAGCATATAAACGCAGAGAGGAGTCGACTATCTCAGAGCTTTGAATACAACTATGGTGATTTCATCCCCATACTCAGGCCTTTCCTTAGAGGCTATTTGAATGTGTGTAAGGATGTCAAAGAGAGGAGGCTCAAGCTCTTCAAAGACCATTTTGTCGATGAGAGGAGGAGACTAACTAGCACCATGAGCAACAAGGAGGATGGTGTAAAATGTGGCATTGATCATATTGTGGAGGCTCAAGAGAATGGTGAGATCACCGAAGACAATGTTCTCTTCATTGTTGAGAATATCAACGTTGCTGCTATTGAGACAACATTGTGGTCAATGGAGTGGGCTATTGCGGAGCTAGTTAACCACCCCAACATCCAGAAAAAGCTGAGGGACGAGCTCGATTTGGTGCTCGGATATGGCGTCCAAATTATGGAGCCCGACATTCGCAATCTACCTTACTTGCAGGCTGTCATCAAGGAGACTTTGCGGTTGAGAATGGCCATTCCTTTGTTAGTGCCTCACATGAATCTCCAAGACGCCAAGTTGGCTTCTTATGACATCCCGGCAGAAAGCAAGATTCTAGTGAATGCATGGTGGCTGGCCAACAACCCTGATCACTGGAACAAACCTCAAGAATTCCGACCTGAGAGGTTTTTGGAGGAGGAGCAACATGTAGATCCTATAGGGAATGACTTTAGATACCTTCCTTTCGGTGCCGGAAGGAGGAGCTGCCCTGGCATTGTTCTTGCCTTGCCCATCGTTGCTATTACTTTGGGTCGTCTCATTCAAAATTTTGAGCTGCTGCCTCCTCTTGGACACTCCAAGATTGATACCACCGAAAAGCCTGGACAGTTCAGCTTGCAAATATTCAACCACTCTACTATTGTGGCAAAGTCAAGGTCTTTATGA 1587 46.57 ESTGASNRVYIICLNFCTSKSYTMDLVLLEKALVGIFVAMVVAISISKLRGKRFKLPPGPIPIPIFGNWLQVGDDLNHRNLTELAKKFGDILLLRMGQRNLVVISSPELAKEVLHTQGVEFGSRTRNVVFDIFTDKGQDMVFTVYGKHWMKMRRIMTIPFFTNKVVQQNRFSWEDEAARVVEDLKNNPEASTTGVVLRKRLQLLMYNNMYRMMFDKRFDSMEDPLFNNLKHINAERSRLSQSFEYNYGDFIPILRPFLRGYLNVCKDVKERRLKLFKDHFVDERRRLTSTMSNKEDGVKCGIDHIVEAQENGEITEDNVLFIVENINVAAIETTLWSMEWAIAELVNHPNIQKKLRDELDLVLGYGVQIMEPDIRNLPYLQAVIKETLRLRMAIPLLVPHMNLQDAKLASYDIPAESKILVNAWWLANNPDHWNKPQEFRPERFLEEEQHVDPIGNDFRYLPFGAGRRSCPGIVLALPIVAITLGRLIQNFELLPPLGHSKIDTTEKPGQFSLQIFNHSTIVAKSRSL 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 111206 113212 + ClCG03G000060.1 Cla03g00006 268506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00006 528 PRINTS P450 superfamily signature 382 393 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00006 528 PRINTS P450 superfamily signature 329 346 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00006 528 PRINTS P450 superfamily signature 461 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00006 528 SUPERFAMILY Cytochrome P450 57 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00006 528 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 24 527 - -
Cla03g00006 528 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 463 472 IPR017972 GO:0005506|GO:0016705
Cla03g00006 528 Gene3D Cytochrome P450 46 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00006 528 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 24 527 - -
Cla03g00006 528 PRINTS E-class P450 group I signature 318 335 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00006 528 PRINTS E-class P450 group I signature 460 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00006 528 PRINTS E-class P450 group I signature 204 222 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00006 528 PRINTS E-class P450 group I signature 85 104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00006 528 PRINTS E-class P450 group I signature 381 399 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00006 528 PRINTS E-class P450 group I signature 470 493 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00006 528 PRINTS E-class P450 group I signature 422 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00006 528 PRINTS E-class P450 group I signature 109 130 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00006 528 PRINTS E-class P450 group I signature 338 364 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00006 528 Pfam Cytochrome P450 57 514 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g01859 Cla03g00006 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01859 Cla-Chr2:33759526 Cla03g00006 Cla-Chr3:111206 0 dispersed
Cla03g00006 Cla-Chr3:111206 Cla11g01116 Cla-Chr11:22630782 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00006 K00487 - csv:101208511 915.22