Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00007 ATGGCGGCTTCCAACCGCTGCATGAACACTTCTTGCAGAGCCGCCATCCCCCACGATTGGACCAAAGGATGGCCTCTGGGATCCGCCGGATACGCACATCTCTGCCTCAACTGCGGATCCGCTTATGAAAATTTAGTCTTCTGTGATACATATCACTTAGAGGAAACTGGTTGGAGGGATTGCAGTTTTTGTGGCAAGAGAATTCACTGTGGATGTATAGCTTCTAAGTCTATGTTTGAATGTCTGGATTATGGAGGTATTGGGTGCACTAGCTGTGTGAAAAGATCTCGACTTGGAGTGATCCAGAGAGATGAAATTTCTAATGGCTTTGATGCAGTGACAGTTGGTAATGTTGGCTTTCTGCCACCTACTTCTGTCGAGGATCAAGTGGTTCGAAATGGCATTAATGAGGAAAAGCTTTTACAGTTGTGTAACATCATGGAGGCAAATGAACCCAACCACTTTCAGCAATCTCAAAGAGTTGACAGAAGTGCATCTCCTGCACAAAACAGAGGAGAAAATCTCAGGAGCCCATTTGGAGAAGTTAGATCAAGCTTTTTTAATATGAATAAGCTACCTGTTAAATGCCAACCATCTGTTGGTTCATTAACGTACTCCAAACTAGATACTAGCAGACCACACTTAGAACTAAAAGATATGAAAGAATCCCTAAGTCAGCCATCGTTAAATATAACTTTGGGAGTTCCATTAGGTACTCCAAACTTTGTGGTACCCTTTTCAGGAAGTGCTGCTGAAGAGGATGAAAAGAGCATTCTGCCATTTCAACAGGGTCAAAGATCTCGTCCAATTTTTCCCAAGCTCATAAAAACTGGGACCGCAGTTAATTCCGAAGCAAGAAAGGGAATGGCACCTCTGGTACGTATTGCTCGGCCACCTGCTGAAGGTCGAGGTAAAAACCAACTTCTTCCAAGGTACTGGCCAAGGATTACCGACCAAGAGCTAGAACAATTATCTGGAGATTTGAATTCTACTATTGTTCCACTCTTTGAAAAGGTGTTGAGTGCTAGTGATGCTGGTCGGATTGGTCGTTTGGTTCTGCCAAAAGCATGTGCTGAAGCATATTTCCCCCCTATCTCCCAATCAGAAGGTCTTCCTGTTAGGATTCAAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAACAACAACAGCAGAATGTATGTTCTGGAGGGCGTTACTCCTTGCATACAATCCATGCAATTAAGAGCTGGTGATACTGTCACTTTTAGTCGGATAGATCCTGGAGGTCAATTAGTCATGGGATTTCGAAAAGCAACAAATTCTACTGATATACAGGATGCAAAGATCCCTACACTTTCTAATGGCTCTCATTCGGGTGACGCCTCATTCTCTGGGGTCTTTCAGAATTTGCCTTTAAGAGCTGAAGGAGAAACTAGTTTGCGTAAAAGTGAAAATTCTGGGGGAAGGACAAATGATGCTTCAGGACAACAACCAGTGTTAACCATAGAGAAGAAAGGGGCTCGAAACATTGGGTCTAAAAACAAGAGGTTGCTCATGCATAGTGAAGATGCTTTGGAGTTAAGACTCACTTGGGAAGAAGCTCAAGATCTACTCCGTCCACCACCAAGTGCAAATCCCACCATTGTCACTATTGATGACCATGAATTCGAAGAGTATGATGAACCTCCAGTTTTTGGCAAGAGGACTATATTCACTGTCCGACCAACTGGGGAACAGAAACAATGGGCTCAGTGTGATGATTGCTCAAAATGGCGGAGGTTGCCTGTGGATGTTCTTCTCCCTCCAAAGTGGAGTTGTCCAGATAATGTTTGGGATTTGAGCAGATGTACATGTTCTGCACCAGAAGAGATCAGCACAAAGGAACAAGACAATCTTCTAAGAGCGAGTAAAGATTTTAAGAAACGTAAAATCATGAAGAGCCAGAAGTCTATTCAGGAACTTGAGCCTTCTGGTTTGGATGCGCTAGCCAGTGCTGCTGTTCTGGGTGATAGTATGGCTGACTTGCAGGAATCAGGTACGACGACCAGGCATCCTCGGCACCGACCAGGATGCACTTGCATCGTGTGCATTCAGCCTCCAAGTGGGAAGGGGAAGCATAAATCTACATGCACATGCAATGTCTGCTTGACTGTAAAACGCCGTTTTAAAACACTTATGCTGCGCAAGAAGAAACGCCAATCAGAACGTGAAGTGGAAACTCTGCTCAAGGATAGGAATCCACAGTTCGATGAAACAGGAACGGGTGGGACACTGAGGGGTACGTCTCTGCAAACAAACTATTTAGAGAATGAAGGAAGCCAGAGCAGGATAAAAGATGAGGAGGCTGCAAATAGCAGTGGGCAAATTGACTTGAACTGCCACCCCGACCGTGAGGACATGGAACTGGAGGGAGCAGGATTAAGCATGATGAGTCTTGTGGAGGCTGCCAGCCAACCTTTAGATAGCTATTCAAAGCAAATTGGCATCTCCAGTGTCACGAGTGAGCAGCAGTCCAGTCAACCAAGTAGCGTGGAGAGTGAGAGACGCCTGTCTGAGGAATTGTGTCATGGATCAGGACACGAGAGCACAAGTGATGGATGCAGAGAGCACCATCGAGATTAA 2616 45.03 MAASNRCMNTSCRAAIPHDWTKGWPLGSAGYAHLCLNCGSAYENLVFCDTYHLEETGWRDCSFCGKRIHCGCIASKSMFECLDYGGIGCTSCVKRSRLGVIQRDEISNGFDAVTVGNVGFLPPTSVEDQVVRNGINEEKLLQLCNIMEANEPNHFQQSQRVDRSASPAQNRGENLRSPFGEVRSSFFNMNKLPVKCQPSVGSLTYSKLDTSRPHLELKDMKESLSQPSLNITLGVPLGTPNFVVPFSGSAAEEDEKSILPFQQGQRSRPIFPKLIKTGTAVNSEARKGMAPLVRIARPPAEGRGKNQLLPRYWPRITDQELEQLSGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPVRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGQLVMGFRKATNSTDIQDAKIPTLSNGSHSGDASFSGVFQNLPLRAEGETSLRKSENSGGRTNDASGQQPVLTIEKKGARNIGSKNKRLLMHSEDALELRLTWEEAQDLLRPPPSANPTIVTIDDHEFEEYDEPPVFGKRTIFTVRPTGEQKQWAQCDDCSKWRRLPVDVLLPPKWSCPDNVWDLSRCTCSAPEEISTKEQDNLLRASKDFKKRKIMKSQKSIQELEPSGLDALASAAVLGDSMADLQESGTTTRHPRHRPGCTCIVCIQPPSGKGKHKSTCTCNVCLTVKRRFKTLMLRKKKRQSEREVETLLKDRNPQFDETGTGGTLRGTSLQTNYLENEGSQSRIKDEEAANSSGQIDLNCHPDREDMELEGAGLSMMSLVEAASQPLDSYSKQIGISSVTSEQQSSQPSSVESERRLSEELCHGSGHESTSDGCREHHRD 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 116780 128080 + ClCG03G000070.1 Cla03g00007 268507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00007 871 CDD B3_DNA 334 435 IPR003340 GO:0003677
Cla03g00007 871 Gene3D - 571 623 - -
Cla03g00007 871 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 838 - -
Cla03g00007 871 MobiDBLite consensus disorder prediction 825 871 - -
Cla03g00007 871 ProSiteProfiles Zinc finger CW-type profile. 574 624 IPR011124 GO:0008270
Cla03g00007 871 MobiDBLite consensus disorder prediction 155 173 - -
Cla03g00007 871 Pfam CW-type Zinc Finger 579 622 IPR011124 GO:0008270
Cla03g00007 871 MobiDBLite consensus disorder prediction 155 176 - -
Cla03g00007 871 Pfam B3 DNA binding domain 336 435 IPR003340 GO:0003677
Cla03g00007 871 MobiDBLite consensus disorder prediction 844 871 - -
Cla03g00007 871 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 4 838 - -
Cla03g00007 871 SMART B3_2 336 436 IPR003340 GO:0003677
Cla03g00007 871 MobiDBLite consensus disorder prediction 825 843 - -
Cla03g00007 871 Gene3D - 314 441 IPR015300 -
Cla03g00007 871 MobiDBLite consensus disorder prediction 474 497 - -
Cla03g00007 871 MobiDBLite consensus disorder prediction 481 496 - -
Cla03g00007 871 SUPERFAMILY DNA-binding pseudobarrel domain 333 437 IPR015300 -
Cla03g00007 871 ProSiteProfiles B3 DNA-binding domain profile. 336 437 IPR003340 GO:0003677
Cla03g00007 871 MobiDBLite consensus disorder prediction 768 793 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02224 Cla-Chr1:36179396 Cla03g00007 Cla-Chr3:116780 2.11E-22 dispersed
Cla03g00007 Cla-Chr3:116780 Cla10g02148 Cla-Chr10:37094920 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60756 PF02362 B3 3.50E-16 CL0405 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00007 - - cmo:103497016 1594.71