Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00015 ATGGCCTCCTCTTCCGGGAGCTTAGACACCTCTGCTAATTCTCATCCCTCTTTCACTTTCTCTACTCATCCTTTTATGACTTCTTCTTACTCTGACCTTCTAGCCTCCGGCAACAACCATCCTCCTTCCTCCGCCGCACCCCACGCCGATCTCCGGGGTTCCGGCACCGGAGTTCCTAAATTCAAATCCCTCCCTCCTCCTTCTCTCCCTCTCTCTCCTCCTCCCCTCTCTCCTTCTTCCTTTTTCGCTATTCCTCCTGGCTTGAGTCCCGCCGAGCTTCTTGATTCCCCTGTTCTTCTCAGTGCTTCTCATGTTTTGCCGTCGCCGACCACTGGGAGTTTCCCGTCTCAGTCGTTGAATTGGAAGAGCAATTCTGGGTATAATCAGCAGAGCATTAAGGAAGAAAACAAATATCTGTCTAATTTCTCATTTCAAACTCAATCGTCAAAGCTGCCGCCGACGTCTTTTCAGCCTTCGTCCACCACAGCTCCCACGACTCAGGGATGGACTTTTCAAGAGCAGCGCAAGAAAGAGGATGGTTTTTCGTCGGAGAAGAATATGGTGAAGCCGGAGTTCGGATCGATGCGGAGCTTCTCACCGGAATATGGGGTTGTTCAAAACCAAAACCAAACCAATGGCAGCGGGGAGTTGCAGTCTGATTACGGCAACAATTACCCTCAACAATCTCAGACGGTGAATCGAAGATCGGACGACGGCTACAACTGGAGAAAATACGGCCAAAAACAGGTTAAAGGAAGTGAAAATCCGAGAAGCTATTACAAGTGCACTTTCCCCAATTGCCCAACAAAGAAAAAGGTCGAAAGATCCTTAGATGGACAGATCACGGAGATCGTTTACAAAGGCAGCCATAACCATCCAAAGCCCCAATCCACAAGGAGGTCGTCGCTGTCGTCCGCCGGTTCTTCCCACACCATGGTGGCTTCGAATCAGGCCACCAGCGAGATGGCGGACCAGTCATTTACAACCCAAGGCAGCGGCCAATTTGATGGCGTTGCAACGCCGGAGAATTCCTCGATTTCAATTGGCGACGACGACTTCGATCGGAGCTCTCAAAAGAGCAAATCCGGAGGGGACGATTTTGATGAGGACGAACCAGAGGCTAAGAGATGGCGAAGAGAAGGTGACAACAATGAAGGTATTTCGGCGGTCGGTAGCCGGACGGTGAGAGAGCCGAGAGTCGTCGTCCAAACCACCAGCGACATCGACATTCTCGACGATGGTTACCGGTGGAGGAAGTATGGTCAGAAAGTTGTAAAGGGAAACCCAAATCCAAGGAGTTACTACAAATGTACAAATCCAGGATGTCCAGTAAGAAAGCATGTGGAGAGAGCTTCACATGATCTAAGAGCAGTGATCACAACTTATGAAGGGAAGCACAACCACGATGTTCCACCGGCACGTGGGAGTGGAAGCCATTCCCTCAGCCGTCCATTCCCCAACAACGAAGCTCCGGCAACTGCGATCCGGCCATCGGCGTTGACCCATCAGTCAAACAACGGGGGGCATCTGCAGGGTCTGAGGCTGCAGCAATCTTCAGATTCCCAAGCAGCATTCACAGTGGAAATGGTGCAAAATGGGAATGGATTTTCATTCCCAGAATTTGGAAACTCAATGGGAATGGGAATGGGAATGGGTTCCTACATCAACCAAACACAGCCCAGTGATAATTTGTTCACCAGAGCCAAAGAAGAGCCAAGAGATCATGACATGTTCATCCAGTCTCTCCTATGTTAG 1755 50.31 MASSSGSLDTSANSHPSFTFSTHPFMTSSYSDLLASGNNHPPSSAAPHADLRGSGTGVPKFKSLPPPSLPLSPPPLSPSSFFAIPPGLSPAELLDSPVLLSASHVLPSPTTGSFPSQSLNWKSNSGYNQQSIKEENKYLSNFSFQTQSSKLPPTSFQPSSTTAPTTQGWTFQEQRKKEDGFSSEKNMVKPEFGSMRSFSPEYGVVQNQNQTNGSGELQSDYGNNYPQQSQTVNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSLSSAGSSHTMVASNQATSEMADQSFTTQGSGQFDGVATPENSSISIGDDDFDRSSQKSKSGGDDFDEDEPEAKRWRREGDNNEGISAVGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPPARGSGSHSLSRPFPNNEAPATAIRPSALTHQSNNGGHLQGLRLQQSSDSQAAFTVEMVQNGNGFSFPEFGNSMGMGMGMGSYINQTQPSDNLFTRAKEEPRDHDMFIQSLLC 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 176047 178546 - ClCG03G000130.1 Cla03g00015 268515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00015 584 MobiDBLite consensus disorder prediction 31 81 - -
Cla03g00015 584 MobiDBLite consensus disorder prediction 348 383 - -
Cla03g00015 584 MobiDBLite consensus disorder prediction 63 81 - -
Cla03g00015 584 Pfam WRKY DNA -binding domain 237 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla03g00015 584 Pfam WRKY DNA -binding domain 412 468 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla03g00015 584 Gene3D WRKY domain 223 296 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla03g00015 584 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 48 545 - -
Cla03g00015 584 SUPERFAMILY WRKY DNA-binding domain 403 471 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla03g00015 584 MobiDBLite consensus disorder prediction 143 171 - -
Cla03g00015 584 MobiDBLite consensus disorder prediction 105 127 - -
Cla03g00015 584 SUPERFAMILY WRKY DNA-binding domain 235 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla03g00015 584 MobiDBLite consensus disorder prediction 291 347 - -
Cla03g00015 584 ProSiteProfiles WRKY domain profile. 406 471 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla03g00015 584 Gene3D WRKY domain 398 464 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla03g00015 584 MobiDBLite consensus disorder prediction 200 236 - -
Cla03g00015 584 MobiDBLite consensus disorder prediction 143 241 - -
Cla03g00015 584 ProSiteProfiles WRKY domain profile. 237 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla03g00015 584 SMART WRKY_cls 236 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla03g00015 584 SMART WRKY_cls 411 470 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla03g00015 584 MobiDBLite consensus disorder prediction 462 492 - -
Cla03g00015 584 MobiDBLite consensus disorder prediction 286 392 - -
Cla03g00015 584 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 48 545 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00274 Cla-Chr2:2700132 Cla03g00015 Cla-Chr3:176047 3.24E-16 dispersed
Cla02g01875 Cla-Chr2:33926380 Cla03g00015 Cla-Chr3:176047 2.63E-110 dispersed
Cla03g00015 Cla-Chr3:176047 Cla10g02125 Cla-Chr10:36911290 6.03E-115 dispersed
Cla03g00015 Cla-Chr3:176047 Cla10g00433 Cla-Chr10:5809593 1.55E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60757 PF03106 WRKY 3.60E-25 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00015 K13424 - csv:101207158 1038.48