Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00023 ATGGAATCAAAGTGTAGCAAGTTATGGTGTGCTTTGGTGTTTGCTTCTTTGATAACTCTAAGCTCTGGCAGTTTATCCGCTACCTACTATAAGAGTTCATGTCCAAAGTTACTCTCCATTGTTCGACGTGAAGTCGTGAAAGCAGTAGACAAAGAGTACAGAATGGGAGCATCGTTGCTTCGCCTCTATTTTCACGACTGTTTTGTCAATGCATGTGATCTATATTTTAAACTTATCTTATATACTTTATATTTTCTCGGATGTGATGCGTCAGTGCTATTGGACGACACGTCAAACTTCACTGGAGAAAAGACGGCAATCCCAAACAAAGATTCGTTGAGAGGTTTTGAAGTAATCGACTCAATTAAAACGCTAGTGGAAGCTGCTTGTCCTTCTGTGGTTTCTTGTGCTGATATTTTGTCCCTTGCAGCCCGAGACTCGGTGGTTACCAGATTTGAAGGGTTTGGTTTGCAGCTTGGGGGGCCTTCGTGGGTAGTTGGACTTGGGCGGAGGGACTCGACCACAGCCAGCTTCGACAGCGCAAACAATGATCTTCCTTCTCCCTTCCTCGACCTTCCCGATCTCATCTCTGCCTTTTCCAACAAAGGCTTCGACACCAAAGAATTGGTCGCCCTTTCAGGATCTCACACGATCGGACAAGCCAGGTGCTCTATGTTCAGAGTAAGAGCCCATAACGAAACCACCACCATTGATTCAGATTTTGCAGCCTCTCTAAGATCCAATTGCCCTTTCTCCGGCGACGACCAAAGTCTTTCTCCTTTGGATCTCAAAACCCAATCCTTATTCGACAATGCTTATTTCAAGAACTTGGTCCAAAACAAAGGCCTTCTTCATTCCGACCAAGCCCTCTTCAGCAACTCCTCCGCCGATTCTCATGTCACTTCCTATGTCTCCGACTCTTCTGCTTTCTTCTCCGACTTCGCCGCCGCCATGGTTAAGATGTCCAACCTCTCCCCGCTCACCGGCTCCGACGGCCAGATTCGTTCCGACTGCCGCAAAATTAACTAA 1029 46.74 MESKCSKLWCALVFASLITLSSGSLSATYYKSSCPKLLSIVRREVVKAVDKEYRMGASLLRLYFHDCFVNACDLYFKLILYTLYFLGCDASVLLDDTSNFTGEKTAIPNKDSLRGFEVIDSIKTLVEAACPSVVSCADILSLAARDSVVTRFEGFGLQLGGPSWVVGLGRRDSTTASFDSANNDLPSPFLDLPDLISAFSNKGFDTKELVALSGSHTIGQARCSMFRVRAHNETTTIDSDFAASLRSNCPFSGDDQSLSPLDLKTQSLFDNAYFKNLVQNKGLLHSDQALFSNSSADSHVTSYVSDSSAFFSDFAAAMVKMSNLSPLTGSDGQIRSDCRKIN 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 273791 276009 + ClCG03G000220.2 Cla03g00023 268523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00023 342 ProSiteProfiles Plant heme peroxidase family profile. 24 342 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla03g00023 342 PANTHER PEROXIDASE 18 342 - -
Cla03g00023 342 PRINTS Haem peroxidase superfamily signature 208 223 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla03g00023 342 PRINTS Haem peroxidase superfamily signature 262 277 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla03g00023 342 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla03g00023 342 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Cla03g00023 342 ProSitePatterns Peroxidases proximal heme-ligand signature. 208 218 IPR019793 -
Cla03g00023 342 PRINTS Plant peroxidase signature 276 293 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla03g00023 342 PRINTS Plant peroxidase signature 160 175 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla03g00023 342 PRINTS Plant peroxidase signature 260 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla03g00023 342 PRINTS Plant peroxidase signature 316 329 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla03g00023 342 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla03g00023 342 PRINTS Plant peroxidase signature 207 219 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla03g00023 342 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla03g00023 342 PANTHER PEROXIDASE 72-RELATED 18 342 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla03g00023 342 CDD secretory_peroxidase 25 341 IPR033905 GO:0004601|GO:0042744
Cla03g00023 342 Gene3D Peroxidase, domain 2 186 321 - -
Cla03g00023 342 Gene3D - 28 342 - -
Cla03g00023 342 Pfam Peroxidase 41 305 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla03g00023 342 SUPERFAMILY Heme-dependent peroxidases 25 342 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00023 Cla-Chr3:273791 Cla11g00557 Cla-Chr11:6305572 2.21E-122 dispersed
Cla09g01169 Cla-Chr9:13907680 Cla03g00023 Cla-Chr3:273791 1.45E-93 dispersed
Cla03g00023 Cla-Chr3:273791 Cla01g01943 Cla-Chr1:34110056 1.04E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00023 K00430 - csv:101221157 541.962