Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00031 AAAACCCTCTTTCCCTCGCTGGCCTTCTTCCCTCCCACTCTCAGCAGGCCCTCACCTTTCTCCAGTTTTCTCTCTCTCGCTCAGATTCCCCGTTTTTCTTGCTTTATCATTCTCTCTGTCCTTCAACCTTTTCTTCTTCCTTCCACTTCAATGGCTTCCACTTCTGGAGATAGATCTTCTCTCGATCCACCCACCTCCAACGACTCCGAGAAGCCTCCAATTGAGCCTATAAGGATGCCTACAGTTGAAGAGATTCGCGGCCAAGATATTTGGAACAACTGTGCAGTTCGCAGTGTTGTTAGTGGAGTCATGGGTGGTGGGCTTGGATTGTTCATGGGATTATTTTTGGGGGCATTGGATAATCCATTGATGCAAGACGAGATGACTGCTAAACAACAATTTGTTTACACTGCAAAACAGATGGGACGGCGTAGTTGGGGTTCTGCAAAGGCGTTTGCAGTCATGGGCTTTATTTTCTCAGCTGCAGAATGTGTTGTAGAAAAGGCTCGAGCCAAACATGATATGACGAATACAGTAGTTGCTGGTTGTGTAACCGGTGGTTCAATATCAGCTAAAGGTGGCCCAAAGGCAGCTTGCGCTGGTTGTGCAGGTTTTGCTGCATTCTCAATATTCCTTCTTCTTCTTCCACAACCAATCCAATATCCAATATCTCACCAAACCAAACTGTCAACTCAACAACTCAAGAAGAGTGAAGAAGTGAAAGCTAAGTCCATCTCGCCATTGCACACCCAAATCTCTTCTTCACCACACACATGTCGACCACCCACGACCCCCAACTGGTCTGCGTCACCGGCGCCAGTGGCTGTATCGGATCCTGGCTCGTTCACCTCCTCCTCCTCCGCGGCTACTCCGTTCACGCCACCCTCCAAAATCTCAGACGAGAGCGAAACCAAGCATCTGGAAGATTTAGAGGGAGCAGAGGCTCGTCTTCGTCTCTTCCAAATCGACCTCCTCGATTATGACTCCATTGTCCCCGCCGTCACTGGTTGTGCTGGCGTCTTCCACGTCGCGTCTCCTTGCATCGTTGATCCTGTACAAGATCCTGAGAGGGATTTATTGGATCCGGCTATCAAAGGAACCATCAATGTCCTGACGGCGGCCAAGGAGGCTGGGGTACAACGCGTAGTGGTGACTTCTTCTATCTCAGCCATGATTCCGAACCCTAACTGGCCGGCGAATGTTGTAAGGAATGAAGAATGTTGGACCGATATTGATTACTGCAAGAAAAAGGGGCTGTGGTATTCAATTTCAAAAACTCTAGCAGAAAAGGCTGCTTGGGATTTTGCTAAGGAGAAAGGATTGGATGTGGTGGTGATTAATCCAGGCACAGTGATGGGCCCTGTGTTTCCTCCCAGAATTAATGCCAGCATGCAAATGCTTTTAAAACTTCTTCAGGGGTGCAGTGAGACATTCGAGGACGTTTTTATCGGAGTAGTGCACTTTAAAGATGTTGCATTAGCACACATTTTGGTCTATGAAAACAAATCAGCTACAGGAAGGCACTTTTGTGCTGAGGCCATAGCTCGTTACTCTGACTATGTAGCGAAGGCTGCTGAACTCTTCCCTCAGTATAATGTGCCCAGATCGGTAGAAGATACACAGCCTGATTTGGTGAGAGCAAAAGATGGAGCCAAGAAGTTGATGAACCTGGGGCTGGAATTCATCCCAATGGAACAAATTCTCAAGGAAGCCGTTGAGGATCTAAAAAAGAAGGGATATATTTCCTGA 1749 47.68 KTLFPSLAFFPPTLSRPSPFSSFLSLAQIPRFSCFIILSVLQPFLLPSTSMASTSGDRSSLDPPTSNDSEKPPIEPIRMPTVEEIRGQDIWNNCAVRSVVSGVMGGGLGLFMGLFLGALDNPLMQDEMTAKQQFVYTAKQMGRRSWGSAKAFAVMGFIFSAAECVVEKARAKHDMTNTVVAGCVTGGSISAKGGPKAACAGCAGFAAFSIFLLLLPQPIQYPISHQTKLSTQQLKKSEEVKAKSISPLHTQISSSPHTCRPPTTPNWSASPAPVAVSDPGSFTSSSSAATPFTPPSKISDESETKHLEDLEGAEARLRLFQIDLLDYDSIVPAVTGCAGVFHVASPCIVDPVQDPERDLLDPAIKGTINVLTAAKEAGVQRVVVTSSISAMIPNPNWPANVVRNEECWTDIDYCKKKGLWYSISKTLAEKAAWDFAKEKGLDVVVINPGTVMGPVFPPRINASMQMLLKLLQGCSETFEDVFIGVVHFKDVALAHILVYENKSATGRHFCAEAIARYSDYVAKAAELFPQYNVPRSVEDTQPDLVRAKDGAKKLMNLGLEFIPMEQILKEAVEDLKKKGYIS 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 320249 331135 + ClCG03G000300.1 Cla03g00031 268531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00031 582 MobiDBLite consensus disorder prediction 245 298 - -
Cla03g00031 582 Pfam NAD dependent epimerase/dehydratase family 307 509 IPR001509 -
Cla03g00031 582 MobiDBLite consensus disorder prediction 53 76 - -
Cla03g00031 582 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 299 573 - -
Cla03g00031 582 CDD FR_SDR_e 300 559 - -
Cla03g00031 582 Pfam Tim17/Tim22/Tim23/Pmp24 family 94 209 - -
Cla03g00031 582 MobiDBLite consensus disorder prediction 53 67 - -
Cla03g00031 582 Gene3D - 292 582 - -
Cla03g00031 582 MobiDBLite consensus disorder prediction 245 301 - -
Cla03g00031 582 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 305 576 IPR036291 -
Cla03g00031 582 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 299 573 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00031 Cla-Chr3:320249 Cla10g01236 Cla-Chr10:27110903 3.61E-79 dispersed
Cla03g00031 Cla-Chr3:320249 Cla10g00724 Cla-Chr10:11568652 2.79E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00031 - - csv:101204420 543.117