Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00054 ATGTTGAAACAGAAGGCATCTCTCCAAAGATATTTACACTTCATTCTACATGGTGGGTTTAGATTCCCTGAAACTCTCTCTGTCAGCAAGAAATTTGGGATGAATTTTTGTTATCTGCTCCGATTGATATTGTTGATGCATTTGCATTTAAATGTGAAGAATGAGTCCTACAGAAGTGTGCTTATGTTGGCTTACCAAAGTCTAGGAGTTGTTTATGGGGACCTCAGCACCTCCCCTCTCTATGTCTACAAAACCACCTTCTCTGGGAAATTGAGTCTCCATGAGAATGATGAAGAGATTTATGGGGTTCTATCCTTTATCTTCTGGACATTTACACTCATTGCTCTCTTCAAATATGTTTTCATTGTCATGTCAGCCGATGATAATGGTGAAGGGGGTACCTTTGCACTGTACTCTCTTCTCTGTAGGCATGCTAGATTATGCATATTACCGAATCAAGAGCCTGTAGATGAACAGTTATCAGCATATGACATCAACGGAATCTCGGAGACAAGGCCGAGTGCTGCTCTAAAGTCTTTTTTTCGGCTGCATCCATCTTTTCGAAGAGGTTTTTTGTTGTTTGTTCTCTTCGGAACCTGCATGGCTATTGGTGATGGAGTGCTTACTCCTGCAATATCAGTTCTTTCAGCAGTCTCAGGAGTCAAACATAAGATCACTGGACTCCATGAGAATTACGTTGTTTTAATCTCGTGCGTCATCTTAGTTGGACTATTCTCCCTCCAGCATCGTGGAACACACAAAGTTGCTTTCATGTTTGCTCCAATCATCACGGTGTGGCTTGTCTGTATTAGTGTCATCGGAATGTATAATATTATCAAATGGAACCCAAGTATTTATCACGCACTCTCTCCAGTTTATATGCTGAAATTCCTTCGAAGCACAGGTGTTGAAGGTTGGATTTCATTAGGTGGAATTGTTCTCTCCATAACAGGTGTGGAGGCAATGTTTGCTGATTTAGGCCACTTCTCTTCACTTTCGATCAAGATTGCCTTCACATTTCTTGTATATCCCTCCTTGATACTTGCTTATTTGGGTGAGGCTGCATTTCTCTCTAAGCACCATGAAGATATTCAGAGAAGCTTCTACAAAGCAATACCTGAAGCTGTGTTTTGGCCAGTGTTCGTCGTGGCCACTTTTGCTTCTGTCGTAGGAAGTCAGGCGGTGATTTCGGCTACATTCTCCCTTGTAAACCAGTGCTGTGCTCTAAATTGTTTCCCCCATGTGAAAACTATGCACACTTCGAATCAGATATATGGGCAGATTTATATCCCAGAAGTTAATTGGATGCTAATGTGCCTTTGTTTAGCTGTGACAATTGGCTTGAGAGACACAAACATGATAGGCCATGCATATGGGCTGGCAGTCACCATTGTTATGTTTATCTCAACTTGCTTGATGACACTTGTGATGATAATTGTTTGGAAGCAGAGGTTGATCAATGCCATAGCATTTTTCATGTTTTTTGGGTCGATTGAACTACTTTACATCTCTGCATCAATTGTCAAAGTGCATGAAGGCGGTTGGATCCCTCTCGTATTTTCTACTATCTTTATGTGTTCGATGTATGCATGGTACTATGGGACGATGAAGAAACACGAATACGACGATGAGAACAAAGTGTCGATGAATAGGATACTTTCTTCAGGGCCTAGCCTTGGCATAGTGCATGTGCCCGGAATTGGACTCATATACACTAATCTGGTCGCTGGTGTTCCTGCTGTTTTTGGTCACTTTGTAACCACTTTGCCTGCATTTCATCAAGTGCTTGTATTTGTTTGTATAAAATACGTTCAAGTTCCCCATATTGACGAAGAAGATCGTTTGCTCATTTCGAGGGTGGGGCCGAAAGAATGCAACATGTTTCGGTGCGTTGTCCGGTATGGTTACAGGGATTTGCTACAAGAGAACTACAATTTCGAGAACAGATTGGTGTTTTCCTTAGTGCATTATGTAGAAACAGATCACTTTTGGAAACCAATGGCACAAGTCTCTAGAGGGTGTGAAAATTCAGAAGAACCTTGTGAATATGAACCATTGGAGCAGGCTTTTACAAGCTCAAATATGTTGCAGTCTTCTAACAAATATCAAGCAACGGATACTGCAGTCGACGACCAGGAAAAGTCTATACATAATGAGGAAGCGGTGCAGATATTGAGAGCGAAAGAATCGGGAATCACGTACATCTTTGGACATTGCTCAGTCAAGGCCAAGAAATCATCTTCCATTTTCAAGAAGTTAGCCATTGATATTGTGTATGCTTTTTTGAAACAAAATTGTAGAGAGCCTGAGGTTTTACTGAATGTGCCTCACACTTCCCTCTTGGAAGTAGGCATGTGTTGTAATATAGCCACACACTTGAGTATTCCCAATAAAACATGGAAGAGAATTGGTCTTCCTCAAGCAAACCACAGCCACTATTTCCCCTACAAAACGCCCTTATATAACACACTCTCCTTCCCCTCCATTTCCACACTTTCCTCTCATAGATCCATCTTTCTCTCCCCCATATCAAAACAACTTAACTTTCATTTTCTCCAACTTATGGATACTGTCATTGGAGCTCTTGATTCATGTAAGCCTTTCAACAATGACATAGCATCCCCGCCTCAAAACGGCTCTCACCCCTCGCCCTCCGTCATCGGATCCTCAGATGCCACGCTCGGTCGCCACCTTGCGCGACGCTTGGTCCAAGTAGGGATTTGTGATGTATTCTCCGTCCCTGGTGACTTCAACCTAACCCTACTCGACCATCTCATTGCTGAGCCTGGACTCACCAACATTGGTTGCTGCAATGAGCTCAATGCTGGCTATGCAGCTGATGGCTACGCAAGGCGTCGTGGGGTTGGTGCATGTGTTGTAACGTTCACTGTTGGAGGGCTAAGTGTCTTGAATGCTATTGCAGGTGCTTACAGTGAAAATCTTCCTGTGATTTGTATCGTTGGTGGCCCAAATACCAATGATTATGGAACCAGTAGGATTCTTCATCACACTATTGGATTGTCTGATTTCAGCCAAGAACTCAGATGCTTTCAAACTGTGACATGTTTTCAAGCTGTGATAAACAATATAGAAGAAGCACATGCTCAAATTGACAAAGCCATATCAACAGCACTGATTGAAAGCAAACCCGTGTACCTTAGCATCAGTTGCAACTTACCTGGTATCCCTCACCCAACTTTCAGCAGAGAGCCCATCCCATTCGCTATTTCTCCAAGGGTTAGCAACGAGATGGGGCTCGAAGCCGCGGTAGAGGCCACCGCGGCGTTCCTCGACAAGGCGGTGAAGCCAGTGATGGTCGGCGGGCCGAAGCTCCGAGTGGCCAAGGCTTGCGATGCATTAGTCGAGCTAGCCGATGCTTGTGGCTACGCGCTTGCCGTGATGCCGTCCGCGAAAGGCTTGGTCCCGGAATACCACCCCCATTTCATCGGAACGTACTGGGGAGCCGTCGGGACCGCCTTCTGCGGCGAGATCGTGGAATCGGCCGACGCATATCTATTCGCTGGCCCCATTTTCAACGATTACAGCTCCGTTGGCTACTCCCTCCTTTTGAAAAAAGAGAAGGCCATCATTGTGGAGCCTGACCGTGTGATGATAGCTAACGGCCCAACATTTGGTTGTATTTTAATGAATGATTTCCTTAGAGAACTTGCAAAAAGACTTAAGAAAAACACAACAGCTTACGAGAATTACCACCGGATCTATGTTCCCGACGGCCAACCGTTGAAATGCAACCCCAATGAGGCGTTGAGAGTCAACATTATGTTTCAGCACATACAGAAGATGCTGTCGGCGGACACGGCGGTGATCGCGGAGACCGGAGACTCGTGGTTCAACTGCCAGAAGTTGAAGCTGCCCAAAGGATGCGGATATGAATTTCAGATGCAATATGGTTCGATTGGGTGGTCTGTTGGTGCGACATTGGGATATGCTCAATCTGTGCCGAGTAAGCGTGTAATTGCGTGCATTGGAGATGGAAGCTTTCAGGTGACAGCACAAGATGTATCAACCATGATTAGGTGTGAACAAAAGACCATAATCTTCTTAATCAACAATGGAGGTTACACTATTGAAGTCGAAATTCACGACGGACCTTACAACGTGATCAAGAATTGGAATTACACTGCCTTAGTCGATGCAATCCACAATGGTGAAGGCAAATGTTGGACTACAAAAGTGCGTACCGAGGAGGAGCTGGTTGAAGCGATCAATACCGCAACAGGGGAGAAGAGTGATTGTTTGTGTTTTATTGAAGTTATTGTTCATAAAGATGATACAAGTAAAGAGTTGCTCGAGTGGGGATCAAGAGTTTGTGCTGCAAATAGTCGCCCTCCAAATCCTCAATGA 4365 44.35 MLKQKASLQRYLHFILHGGFRFPETLSVSKKFGMNFCYLLRLILLMHLHLNVKNESYRSVLMLAYQSLGVVYGDLSTSPLYVYKTTFSGKLSLHENDEEIYGVLSFIFWTFTLIALFKYVFIVMSADDNGEGGTFALYSLLCRHARLCILPNQEPVDEQLSAYDINGISETRPSAALKSFFRLHPSFRRGFLLFVLFGTCMAIGDGVLTPAISVLSAVSGVKHKITGLHENYVVLISCVILVGLFSLQHRGTHKVAFMFAPIITVWLVCISVIGMYNIIKWNPSIYHALSPVYMLKFLRSTGVEGWISLGGIVLSITGVEAMFADLGHFSSLSIKIAFTFLVYPSLILAYLGEAAFLSKHHEDIQRSFYKAIPEAVFWPVFVVATFASVVGSQAVISATFSLVNQCCALNCFPHVKTMHTSNQIYGQIYIPEVNWMLMCLCLAVTIGLRDTNMIGHAYGLAVTIVMFISTCLMTLVMIIVWKQRLINAIAFFMFFGSIELLYISASIVKVHEGGWIPLVFSTIFMCSMYAWYYGTMKKHEYDDENKVSMNRILSSGPSLGIVHVPGIGLIYTNLVAGVPAVFGHFVTTLPAFHQVLVFVCIKYVQVPHIDEEDRLLISRVGPKECNMFRCVVRYGYRDLLQENYNFENRLVFSLVHYVETDHFWKPMAQVSRGCENSEEPCEYEPLEQAFTSSNMLQSSNKYQATDTAVDDQEKSIHNEEAVQILRAKESGITYIFGHCSVKAKKSSSIFKKLAIDIVYAFLKQNCREPEVLLNVPHTSLLEVGMCCNIATHLSIPNKTWKRIGLPQANHSHYFPYKTPLYNTLSFPSISTLSSHRSIFLSPISKQLNFHFLQLMDTVIGALDSCKPFNNDIASPPQNGSHPSPSVIGSSDATLGRHLARRLVQVGICDVFSVPGDFNLTLLDHLIAEPGLTNIGCCNELNAGYAADGYARRRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNTNDYGTSRILHHTIGLSDFSQELRCFQTVTCFQAVINNIEEAHAQIDKAISTALIESKPVYLSISCNLPGIPHPTFSREPIPFAISPRVSNEMGLEAAVEATAAFLDKAVKPVMVGGPKLRVAKACDALVELADACGYALAVMPSAKGLVPEYHPHFIGTYWGAVGTAFCGEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVEPDRVMIANGPTFGCILMNDFLRELAKRLKKNTTAYENYHRIYVPDGQPLKCNPNEALRVNIMFQHIQKMLSADTAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPSKRVIACIGDGSFQVTAQDVSTMIRCEQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTALVDAIHNGEGKCWTTKVRTEEELVEAINTATGEKSDCLCFIEVIVHKDDTSKELLEWGSRVCAANSRPPNPQ 1454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 572640 583722 - ClCG03G000570.2 Cla03g00054 268554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00054 1454 CDD TPP_PDC_IPDC 1255 1437 - -
Cla03g00054 1454 CDD TPP_PYR_PDC_IPDC_like 896 1057 - -
Cla03g00054 1454 Pfam Thiamine pyrophosphate enzyme, central domain 1090 1206 IPR012000 GO:0000287|GO:0030976
Cla03g00054 1454 PANTHER PYRUVATE DECARBOXYLASE-RELATED 855 1454 - -
Cla03g00054 1454 Gene3D - 1080 1242 - -
Cla03g00054 1454 SUPERFAMILY DHS-like NAD/FAD-binding domain 1079 1232 IPR029035 -
Cla03g00054 1454 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 1258 1448 IPR029061 -
Cla03g00054 1454 Pfam K+ potassium transporter 65 638 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cla03g00054 1454 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 893 1067 IPR029061 -
Cla03g00054 1454 TIGRFAM kup: potassium uptake protein 63 789 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cla03g00054 1454 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 1300 1425 IPR011766 GO:0003824|GO:0030976
Cla03g00054 1454 PANTHER PYRUVATE DECARBOXYLASE 855 1454 IPR012110 GO:0016831
Cla03g00054 1454 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 893 1060 IPR012001 GO:0030976
Cla03g00054 1454 Gene3D - 1248 1439 - -
Cla03g00054 1454 Gene3D - 889 1065 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00054 Cla-Chr3:572640 Cla04g00694 Cla-Chr4:21784989 0 dispersed
Cla04g00693 Cla-Chr4:21754404 Cla03g00054 Cla-Chr3:572640 4.61E-56 dispersed
Cla11g00037 Cla-Chr11:492278 Cla03g00054 Cla-Chr3:572640 0 dispersed
Cla10g02110 Cla-Chr10:36795136 Cla03g00054 Cla-Chr3:572640 0 wgd
Cla03g00054 Cla-Chr3:572640 Cla04g00692 Cla-Chr4:21725270 5.74E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00054 K03549 - csv:101222845 1372.84