Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00057 ATGGCGAAAACGGCGGCGCTTTCGTGGACGCGAAGTAAGTGTCTCATCGGAAAGGGCTCCTTTGGAACAGTGAGTGTCGGAATCGGGAAATCGGACGGTCGGATTTTCGCGGTGAAATCTGTGGAGCAGAGTGATGGATTTCGGCGACAAATTGAGTGTTTAGAGAACGAAATTCGGATTCTCCGATCCTTGAATTCGCCTTACGTTGTGGGGTTTCTTGGCGATGATGTTTCTGTTGAGTCTCCCACGACGTCGTTTCGAAATCTGCACATGGAGTATTTGCCAGGTGGCACCGTTGCCGACGATCCCACCGGGGCCGGCGGTGAGAAGCTTTTACGGGAGAGAACATGGTGCCTCGTTTCGGCTCTGAGTTACATTCACTCGAAAGGAATTGTCCATTGTGATGTTAAAGGGAGGAACATTTTGATCGGATTGAATCCCGGGGTCGTGAAATTGGCTGATTTCGGCTCTGCAATTGAGCTTTCAGGCGCCGACGACAGGTGTCGGGGTTCGGTTGCGCCACGTGGGAGTCCATTGTGGATGGCGCCGGAGGTGGTCCGGGGAGAATTTCAGGGGCCGGAATCGGATGTTTGGTCCGTTGGGTGCACGGTCATTGAAATGGTCACCGGAAAACCGGTGTGGGAAGATTTCGGAGCCGATACGCTGAGTCGAATCGGATTTTCGGATGATTTGCCGGAGTTTCCAACACGGTTGTCAGAAGTCGGCCGGGATTTTCTCCGGAAGTGTCTCAGAAGGAATCCTAGTGAACGGTGGAGCTGTGATCGGCTGCTGCAGCATCCATTTCTGGCGGCGGCGGCGGCCTCGCCGGAGATTGCTGTAGAGAATTCCCCCAGGTGTGTGCTTGACTGGGTCAACGGCAGTTTCTCCGACGAAGAGGAGGAAGTTCAGATCGCCAACGAAACCTCCGGCTCCGGTGGGCAGGAAAGTGAGATCTCTGCTAAGGAAAGAATTGGGAAATTGAGTACGAGTGAATGGCCGAATTGGGAATCGGACGGTTGGTCGCCGGTGAGAAGATGTTGCAGTGAAGCGGCGGCGGAGACGGAGGCGAGCGGTCGGGAAGAAGAAAAAGAAGAGAGAGGGGCAGAATGGGAATATGTAAATTTGAGAGGGGTAGAAGGGGGAATGGAGGGGACAAGTTCGGAATATTCGGAGTTTGTAACAGACAATCACGGAAAATTGGGTGCCGAATATTCAAATCCTGGCGGTAAGAAAATTTCGGAGCAGCCACGTAATAATTACGGCGGCGGTGACGGTGACGGTGGCGTTAGCGGTGGATTAATTTTCCTGCGGTGTGGGTTTGAAGGATGTGCAATTACAACAATAACCTCGTGGATATACTCAATTGAATTGATATTATGTTATTATTGGAAAATATTAATGAAGCAATTGGTGTTATTTGGGAATTACACTTTATTACCTTTCTTTTCTGCCTAA 1455 51.13 MAKTAALSWTRSKCLIGKGSFGTVSVGIGKSDGRIFAVKSVEQSDGFRRQIECLENEIRILRSLNSPYVVGFLGDDVSVESPTTSFRNLHMEYLPGGTVADDPTGAGGEKLLRERTWCLVSALSYIHSKGIVHCDVKGRNILIGLNPGVVKLADFGSAIELSGADDRCRGSVAPRGSPLWMAPEVVRGEFQGPESDVWSVGCTVIEMVTGKPVWEDFGADTLSRIGFSDDLPEFPTRLSEVGRDFLRKCLRRNPSERWSCDRLLQHPFLAAAAASPEIAVENSPRCVLDWVNGSFSDEEEEVQIANETSGSGGQESEISAKERIGKLSTSEWPNWESDGWSPVRRCCSEAAAETEASGREEEKEERGAEWEYVNLRGVEGGMEGTSSEYSEFVTDNHGKLGAEYSNPGGKKISEQPRNNYGGGDGDGGVSGGLIFLRCGFEGCAITTITSWIYSIELILCYYWKILMKQLVLFGNYTLLPFFSA 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 605060 606514 - ClCG03G000610.1 Cla03g00057 268557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00057 484 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Cla03g00057 484 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 368 - -
Cla03g00057 484 SMART serkin_6 10 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00057 484 CDD STKc_MAPKKK 8 269 - -
Cla03g00057 484 ProSiteProfiles Protein kinase domain profile. 10 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00057 484 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 5 368 - -
Cla03g00057 484 Gene3D Transferase(Phosphotransferase) domain 1 5 323 - -
Cla03g00057 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Cla03g00057 484 Coils Coil 44 64 - -
Cla03g00057 484 SUPERFAMILY Protein kinase-like (PK-like) 14 287 IPR011009 -
Cla03g00057 484 Pfam Protein kinase domain 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00198 Cla-Chr2:2096574 Cla03g00057 Cla-Chr3:605060 4.39E-65 dispersed
Cla03g00057 Cla-Chr3:605060 Cla09g01020 Cla-Chr9:10720401 2.45E-57 dispersed
Cla03g00057 Cla-Chr3:605060 Cla02g00871 Cla-Chr2:12323447 2.49E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80403 PF00069 Pkinase 8.60E-53 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00057 - - cmo:103497226 780.015