Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla03g00058 | ATGTCTGTCTCCGTTGCGGTTTCGAATTCGCCGGGATTTTCTCCTTCGTCTATGTTCTGCAACAAGACGTCGATCATTTCTCCGGCGCCGGAGGCTCTCACGCTTACTTTAGCCCATTTAAAGTCGTCGCAGGCTTCTTCGTCTTGCTCTTCTTCCCCTTCTTCGCCTTCTTCCCCTTTTCGGATTAGGTTTCCCAAGCCCCCTTCTGGGCTTTCGGCGGCAGCGGCAGCGGTGGCGGTGGCTTCCACTTCTTCTCCTTCGTCGTCGTCGTCAAGCGCGATCTTGAAGAGGAAGAGACCGGCTAGGTTGGATATTCCGTTGACGCCATTGAGTTTTGGGGCTCCGGTGATGCCGTCGCCATCGTCGTTCAGGGAGGTGGTGGAGGCCGAGAGAGATGGGTATTCCGTGTATTGTAAGAGAGGGAGGAGGAGAATTGCGATGGAAGATCGCTATTCTGCCGCTATTGATCTTCGAGGAAATTCCAAAGAGGGGTTTTTTGGTGTATTTGATGGACATGGAGGTGCGAAGGCTGCAGAATTTGCAGCAAATAACTTAGAGAAGAACGTTATGAATGAAATTGAAAGACTGGCTGATAATGAAACTGATTTTGAACAAGCCATTAAACATGGCTACCTCACCACAGATTCTGATTTCCTCAAGGAGGATCAACGTGGTGGTTCATGTTGTGTGACAGCCTTGATCAAGAAAGGCAACCTTGTTATCTCCAACGCCGGTGACTGCCGTGCCGTTCTCAGCAGCCAAGGTGTTGCCGAGGCCATAACCTCCGACCACCGCCCGTCTCGGGAAGATGAAAGGCGCAGGATCGAGTCCACGGGTGGATATGTTGATTTGTGCAATGGCATTTGGAGAGTCCAGGGATCTCTAGCTGTAACTAGAGCAATTGGGGATGCTCACCTCAAACAATGGGTGATAGCAGAGCCGGAGACGAGGGAAATTCGGATCGAACCTCGACACGAGTTCTTGATCTTGGCCTCAGACGGATTATGGGAAACGGTGAGCAATCAAGAAGCAGTGGACATTGCACATCCGTTGTGTGTGGGGATTGAGAAGGCAAAGCCATTGATGGCATGTAAAAAGCTTGTAGAGCTCTCACTTTCAAGAGGTTCAGTTGATGACATTAGTGTAGTACTGATTCAATTGGCTAACTTCATCTAA | 1176 | 50.09 | MSVSVAVSNSPGFSPSSMFCNKTSIISPAPEALTLTLAHLKSSQASSSCSSSPSSPSSPFRIRFPKPPSGLSAAAAAVAVASTSSPSSSSSSAILKRKRPARLDIPLTPLSFGAPVMPSPSSFREVVEAERDGYSVYCKRGRRRIAMEDRYSAAIDLRGNSKEGFFGVFDGHGGAKAAEFAANNLEKNVMNEIERLADNETDFEQAIKHGYLTTDSDFLKEDQRGGSCCVTALIKKGNLVISNAGDCRAVLSSQGVAEAITSDHRPSREDERRRIESTGGYVDLCNGIWRVQGSLAVTRAIGDAHLKQWVIAEPETREIRIEPRHEFLILASDGLWETVSNQEAVDIAHPLCVGIEKAKPLMACKKLVELSLSRGSVDDISVVLIQLANFI | 391 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 625743 | 627599 | - | ClCG03G000620.1 | Cla03g00058 | 268558 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla03g00058 | 391 | SMART | PP2C_4 | 126 | 385 | IPR001932 | - | |
| Cla03g00058 | 391 | Gene3D | - | 134 | 390 | IPR036457 | - | |
| Cla03g00058 | 391 | SMART | PP2C_SIG_2 | 142 | 387 | IPR001932 | - | |
| Cla03g00058 | 391 | Coils | Coil | 182 | 202 | - | - | |
| Cla03g00058 | 391 | Pfam | Protein phosphatase 2C | 139 | 380 | IPR001932 | - | |
| Cla03g00058 | 391 | PANTHER | PROTEIN PHOSPHATASE 2C | 3 | 390 | IPR015655 | GO:0004722|GO:0006470 | |
| Cla03g00058 | 391 | PANTHER | PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED | 3 | 390 | - | - | |
| Cla03g00058 | 391 | ProSitePatterns | PPM-type phosphatase domain signature. | 165 | 173 | IPR000222 | GO:0043169 | |
| Cla03g00058 | 391 | SUPERFAMILY | PP2C-like | 133 | 388 | IPR036457 | - | |
| Cla03g00058 | 391 | ProSiteProfiles | PPM-type phosphatase domain profile. | 133 | 387 | IPR001932 | - | |
| Cla03g00058 | 391 | CDD | PP2Cc | 133 | 387 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla03g00058 | Cla-Chr3:625743 | Cla07g00409 | Cla-Chr7:5353131 | 2.54E-123 | dispersed | |
| Cla07g00046 | Cla-Chr7:482117 | Cla03g00058 | Cla-Chr3:625743 | 6.22E-21 | dispersed | |
| Cla11g01750 | Cla-Chr11:31111961 | Cla03g00058 | Cla-Chr3:625743 | 4.87E-40 | dispersed | |
| Cla03g00058 | Cla-Chr3:625743 | Cla07g00237 | Cla-Chr7:2622852 | 4.22E-46 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla03g00058 | K17506 | - | csv:101207841 | 648.277 |