Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00075 ATGGGTTTGAATGAGCCGCTGGTATTTGGGGATTTGGAGATCAATGGAGGTGGCGAGACGGCGGCGGTTGCGGTGGTGAGGTTTGGGTTGGTTAGAGATTTGTGGGGAAATTTGGTGAAAGTGGTTTTTGGAACGAAGCTTGCTCTGCTTTTTCCGGCCATCCCTTTGGCTATGGCGGCGGAAATTTACAGCTTTGGAAGAACATGGACATTTGGTTTGAGCTTACTTGGATTGGCCCCACTTGCAGAACGTGTCATTAGTGGGCTAGTGAATGCAACATGTGGGAATGCAACAGAGTTAATAATAGCAATATTTGCTTTGCATCAAAATAAAGTTCATGTCTTGAAGTTTTCTCTTTTGGGTTCTATTCTCTCCAATTTACTTCTAGTCCTTGGCACATCCCTTTTCTTTGGTGGCTTATCCAATCTCAACAAGCAACAAACTTTCAACCCAAAAGTGGCCAATGTGAGCTCTGTGGTGTTGCTGTTGGGATTGGTATGCCAAATGCTGCCATTGATGTTCACATTTGCATCACCCAAAATCTCAACAAATTTTTCTTTACTTCAATTATCAAGAACTTGCAGCCTTCTAATGCTCACAGCATACATTGCTTATGTCTTCTTCCAGTTGAAAACCCATCACCAATTTTTTGGTCTACCACAGTTAACAATAAATGTTTGTAATAAAAAGGAGGAAGAGGATGAAGAAGAAAGGGCAGTGGTTGGATTTTGGAGCTCATTTGGTTGGTTGGTTGGTATGACCATAGTCATAGCTATTTTATCACAATACATTGTGGCAACAATTGAGGATGCATCAAAATCATGGGGAGTTTCAGTGAGCTTTATAAGCATAATTTTGCTACCAATTATGGGCAATGCAGCAGAACATGCTGGATCAATTATTTTTGCTGTCAAGAACAAATTGGATATAACACTAGGGATAGCCTTGGGATCTGCAGCCCAAATTTCCCTATTTGTGGTGCCCTTGAGTGTGATTATTGGATGGTGCATGGGCATCAAAATGGATCTTGATTTTGGTATACTTGAAACAACTTCTCTTGCCTTTACCATCATCTTGACTATCTTCACCTTACAGGATGGAAGTTCACATTACATCAAAGGAATG 1125 41.07 MGLNEPLVFGDLEINGGGETAAVAVVRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAMAAEIYSFGRTWTFGLSLLGLAPLAERVISGLVNATCGNATELIIAIFALHQNKVHVLKFSLLGSILSNLLLVLGTSLFFGGLSNLNKQQTFNPKVANVSSVVLLLGLVCQMLPLMFTFASPKISTNFSLLQLSRTCSLLMLTAYIAYVFFQLKTHHQFFGLPQLTINVCNKKEEEDEEERAVVGFWSSFGWLVGMTIVIAILSQYIVATIEDASKSWGVSVSFISIILLPIMGNAAEHAGSIIFAVKNKLDITLGIALGSAAQISLFVVPLSVIIGWCMGIKMDLDFGILETTSLAFTIILTIFTLQDGSSHYIKGM 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 795633 802119 + ClCG03G000780.1 Cla03g00075 268575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00075 375 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 21 375 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cla03g00075 375 TIGRFAM caca2: calcium/proton exchanger 33 375 - -
Cla03g00075 375 Pfam Sodium/calcium exchanger protein 81 210 IPR004837 GO:0016021|GO:0055085
Cla03g00075 375 Pfam Sodium/calcium exchanger protein 246 365 IPR004837 GO:0016021|GO:0055085
Cla03g00075 375 Gene3D - 81 227 IPR044880 -
Cla03g00075 375 Gene3D - 238 375 IPR044880 -
Cla03g00075 375 TIGRFAM cax: calcium/proton exchanger 78 374 IPR004798 GO:0006816|GO:0015369
Cla03g00075 375 PANTHER VACUOLAR CATION/PROTON EXCHANGER 21 375 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00075 Cla-Chr3:795633 Cla10g00392 Cla-Chr10:5330239 7.14E-92 dispersed
Cla10g02088 Cla-Chr10:36577096 Cla03g00075 Cla-Chr3:795633 2.04E-121 wgd
Cla03g00075 Cla-Chr3:795633 Cla04g00705 Cla-Chr4:21971987 1.61E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00075 K07300 - csv:105436053 565.074