Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00084 ATGGCCAACGACGTCGTTTGCCTTTTCCCCTTCCCCTCTTTCTACCTCATTCTCATTTTCTCCTATTTCATTTGGTTTCATTTCCTCGCCCGTAAGCTCACCGGTCCGCCCGTATGGCCACTCATCGGCAGCCTTCCGGCTCTCATCTCGAACCGGCGGCGACTCCACGACTGGATGGCCGGCAACCTCCGCGCCACAGGCGGCGCCGCCACTTACCAAACCTGCACGGTGGCGCTTCCATTCATAGCTAAAAAACAAGGATTTTACACGGTCACGTGCCACCCGAGAAACATCGAGCACGTGCTCCGAACCCGGTTCGAAAATTACCCGAAAGGACCGGACTGGCAAGCGGCTTTTCACGATTTATTAGGGCAAGGGATTTTCAACAGCGACGGAGAAATTTGGCTGATTCAACGGAAGACGGCGGCGCTTGAATTCACGACGAGGACTCTCCGGCAGGCAATGGACCGGTGGGTGAATCGGACGATACGGACGCGACTGTGGTGTATATTGGAGAAGGCGGCGGAGTACAAAACGGCGGTGGATTTGCAGGATTTGTTGCTCCGATTAACATTTGATAATATTTGTGGGCTGACTTTTGGGAAAGATCCACAAACTTTGTCGCCGGAATTGCCTGCGAATCCGTTTGCTTTGGCATTTGATACCGCCACTGAGGCCACTCTTCAGCGCCTTCTTTACCCTGGTCTTTTATGGAGGTTGGAGAAGCTTCTGGGCATTGGAATGGAAAGAAGGTTGAAGAAGAGTTTGAAAGTAGTAGAAGAATACATAAACGACGCCGTTGCAGCCCGTAAACAATCTCCCTCCGACGACTTATTATCACGCTTCATGAAGAAACGCGACGGCGACCGCTTCTCCGCCGCCGTCCTCCACCGCATCGCATTAAACTTCGTCCTCGCCGGCCGAGACACCTCCTCCGTGGCTCTCACGTGGTTCTTTTGGCTAGTAATGAACCACCCACACGTAGAGGAAAAAATCATCTCCGAAATCTCAACGGTCCTCCGCCAGACACGAGGCGACGATCCACGCCGTTGGATCGAAGAACCGTTGGTATTCGACGAAGCCGACAAATTAGTGTACTTAAAAGCCGCGTTGGCCGAAACGCTGCGTTTATACCCTTCCGTACCGCAGGATTTCAAGTATGTCGTGGCTGATGACGTGTTGCCAGATGGCACTTTTGTGCCAGCTGGTTCAACCGTGACGTATTCGATTTATTCGGTCGGGAGGATGAAGAGCATTTGGGGGGAGGATTGTGCGGAGTTTAAACCGGACCGGTGGTTGTCTCCCGCCGGGGACCGGTTCGAGGGGCCAAAGGATGCCTACAAATTTGTGGCGTTTAATGCTGGACCGAGGACTTGTTTGGGGAAGGATTTGGCTTATTTGCAAATGAAGTCCGTTGCCTCCGCCGTACTCCTCCGGTACCGGCTAGCGCCGGTTCCCGGTCACCGGGTGGAACAGAAAATGTCTCTTACACTTTTTATGAAGAACGGGCTTCGTGTTTATTTGCATCCTCGCCGGCTTGCCTAG 1545 53.14 MANDVVCLFPFPSFYLILIFSYFIWFHFLARKLTGPPVWPLIGSLPALISNRRRLHDWMAGNLRATGGAATYQTCTVALPFIAKKQGFYTVTCHPRNIEHVLRTRFENYPKGPDWQAAFHDLLGQGIFNSDGEIWLIQRKTAALEFTTRTLRQAMDRWVNRTIRTRLWCILEKAAEYKTAVDLQDLLLRLTFDNICGLTFGKDPQTLSPELPANPFALAFDTATEATLQRLLYPGLLWRLEKLLGIGMERRLKKSLKVVEEYINDAVAARKQSPSDDLLSRFMKKRDGDRFSAAVLHRIALNFVLAGRDTSSVALTWFFWLVMNHPHVEEKIISEISTVLRQTRGDDPRRWIEEPLVFDEADKLVYLKAALAETLRLYPSVPQDFKYVVADDVLPDGTFVPAGSTVTYSIYSVGRMKSIWGEDCAEFKPDRWLSPAGDRFEGPKDAYKFVAFNAGPRTCLGKDLAYLQMKSVASAVLLRYRLAPVPGHRVEQKMSLTLFMKNGLRVYLHPRRLA 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 890944 893589 - ClCG03G000870.1 Cla03g00084 268584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00084 514 Gene3D Cytochrome P450 29 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00084 514 PANTHER CYTOCHROME P450 15 512 - -
Cla03g00084 514 PANTHER CYTOCHROME P450 FAMILY-DEPENDENT FATTY ACID HYDROXYLASE 15 512 - -
Cla03g00084 514 Pfam Cytochrome P450 90 501 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00084 514 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 452 461 IPR017972 GO:0005506|GO:0016705
Cla03g00084 514 SUPERFAMILY Cytochrome P450 24 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00084 514 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00084 514 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00084 514 PRINTS P450 superfamily signature 450 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00084 514 PRINTS P450 superfamily signature 459 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00084 514 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00084 514 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00084 514 PRINTS E-class P450 group I signature 368 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00084 514 PRINTS E-class P450 group I signature 449 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla03g00084 514 PRINTS E-class P450 group I signature 459 482 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00084 Cla-Chr3:890944 Cla06g00341 Cla-Chr6:4336709 0 dispersed
Cla03g00084 Cla-Chr3:890944 Cla01g00254 Cla-Chr1:2583198 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00084 K15401 - csv:101214516 993.03