Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00116 ATGGGGGAGGAGGAAGTGCCCATTTTGAAAACAGAACATTGGCATGAACTTAAGACGCCAGTAGCTGCTAAGAAGAAGGATGTTTCTATTCCCAATTCCCCAGGGTCAGAAGCAAAACGTTGCAGTTCTGGCTGTGCTTTTTCCAGATTGGAACACAGTAATTTGGAGTCATTAAAACGTTCTAAATCAGCTATGAAGCTTGGTGGATTGATATTATTTTATACCATAGCTATGGCAGTAGAGACTATTGGTGGTTTGAGAGCTAACAGTCTAGCTGTAATGACAGATGCAGCCCACTTGCTTAGTGATGTTGCTGGTTTCTCTGTTTCCCTCTTTGCAGTTTGCGTTTCGGGCTGGGAGGCAACACTGCAACACTCATTCGGGTATTACCGTCTTGAAGTTTTAGGTGCCCTTGTGTCTGTTCAGCTCATATGGCTGATTTCTGGGGTCTTAATCTACGAGGCGATCGACCGGATTCTTAGCCAAAAGACTAAGGTGGATGGTTTCCTTATGTTTGCCATTGCAGCTTTTGGATTCACTCTTAACTTGTTTATGGTCATGTGGCTTGGCCATAGCCACCACTCTCATTCATCTCATTGTTGTCATCATCATCATGATCATCACTCTCACTCTCATCAGAATCACTTGGATCATGAACCTGACCATAAGGAGGAGGAGATTTTCACAGCAACCAAACAAGAGGGTGCTTCTTTGGGGTCGAAGGACAATAGTTCAATGTTGAACATAAATCTCCAAGGTGCTTATCTTCATGTCATTACTGATATGATTCAATCTATTGGTGTGATGATTTCTGGAGTCATTCTATGGTTTAAACCCGACTGGATCGTCGTCGATTTAATCTGCACTCTTGTATTTTCTGTTCTTGCTTTAGCTACTACTTTCTCTATGCTTAGACGTATAGCTGGTATATTGATGGAAGGAACACCTAGGGAGATCAATATTGAGAGCCTGGAAAATGAGCTCAAGGACATAAAAGGAGTCCATTATTTGCATGACTTGCACATTTGGTCCATAACGGCCGGAAAAGTCGTGTTGTCGTGCCATGTTGTCGCCGAAGCCGGAGTTTGTTCTAGGGAGCTAATTTTGAAGATTAGAAGCCTTTGTGAAGACAGATACAATATAATTCATACTACCATACAAGTTGAGTAG 1170 42.39 MGEEEVPILKTEHWHELKTPVAAKKKDVSIPNSPGSEAKRCSSGCAFSRLEHSNLESLKRSKSAMKLGGLILFYTIAMAVETIGGLRANSLAVMTDAAHLLSDVAGFSVSLFAVCVSGWEATLQHSFGYYRLEVLGALVSVQLIWLISGVLIYEAIDRILSQKTKVDGFLMFAIAAFGFTLNLFMVMWLGHSHHSHSSHCCHHHHDHHSHSHQNHLDHEPDHKEEEIFTATKQEGASLGSKDNSSMLNINLQGAYLHVITDMIQSIGVMISGVILWFKPDWIVVDLICTLVFSVLALATTFSMLRRIAGILMEGTPREINIESLENELKDIKGVHYLHDLHIWSITAGKVVLSCHVVAEAGVCSRELILKIRSLCEDRYNIIHTTIQVE 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1167609 1168778 - ClCG03G001210.1 Cla03g00116 268616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00116 389 Pfam Cation efflux family 71 312 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cla03g00116 389 Gene3D Cation efflux protein transmembrane domain 67 311 IPR027469 -
Cla03g00116 389 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 318 389 IPR036837 -
Cla03g00116 389 SUPERFAMILY Cation efflux protein transmembrane domain-like 68 313 IPR027469 -
Cla03g00116 389 TIGRFAM CDF: cation diffusion facilitator family transporter 71 389 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cla03g00116 389 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 5 389 - -
Cla03g00116 389 PANTHER METAL TOLERANCE PROTEIN B 5 389 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00116 Cla-Chr3:1167609 Cla06g00085 Cla-Chr6:868135 1.79E-43 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00116 K14689 - csv:116403740 606.29