Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla03g00118 | ATGCGTGTCAAAAAGGAAGTCTCTCTCTTGTCGCGCTGCTCCAATCTTATTGGGCCACGTTTCCACCACCTCCCCAAACTAATTCTACGCGTGTCCTCTTCTGATCAACCCACCCCTTCTCAATCAACGGCTCAGATCTTTCCATTCACTACGTCACGCACTTTACTACCTCTTCGATCTGCCCGTCTCTCCCCGGTTGCCGTCGCCGTCGTCGTCGTCGTCGGCATATTTCGGAGATTGAAGGGGCAGGGGAGATTAAAGAACTTAGTAATGGCGGAGATTTGCTGTAAAGTGATGAGTGAGAGTGAGGCGTCGTCGTCCTGCGAGCCGAGCTCGCGAGTGGCTAGACGTCGGAGAATGGAGATCAGGAGGTGTAAATTTGTCGCCGGAGTTGCTCCGTCGGAGACTGAGACTGTTGCAAAGAGGCAGAAGCTGGAGGATCGAGCTACGTCAATATCCAGAGACTGTGATAACGCAGTCCAGAATTGTGATTCGGGAGAAGAAGAAACGGTCGGGAGATTTGTGGCCGGAGAGGTTTCGACGAAGGAGGTATCAACTCCTCTATCTCGGGAATCTCCCTCTGGCGAAGTGATTCCGAAGTTCGGATTCTCTTCTGTTTGTGGAAGGCGGAGAGATATGGAGGATGCGGTGGCGGTTCATCCATCGCTTTGTTTGACAGACAAGAAAGCCACCGATATGTTGCACTTCTTCGGTGTTTACGATGGCCATGGCTGCTCTCATGTGGCGATGAGGTGCAAGGAGCGGCTGCATGAACTGGTAAAAGATGAGTTGGATAGAGAAGAGAAGGAAGACGCCGCTGCTGCGGCAGAGGCGGAGGCGTCGCGGTGGGACCGTGCTATGAAGAGAATCTTCTGGCGAATGGACAACGAAGTTGTGGCGCGAAACAATGAAGAAGTTGTGGTTGCGAACTGTAGATGCGAGCTTCAGTCGCCGGATTGTGATGCCGTCGGATCTACCGCCGTCGTCGCAATTGTGACGCCGGATAAGATCATCGTCGCCAACTGCGGCGATTCCAGAGCCGTTCTCTGTCGCAACGGAAAGGCCATCCCTCTCTCCTCCGATCATAAGCCGGATCGTCCCGACGAACTTAGCCGAATCGAGGAAGCCGGTGGGCGAGTGATTTACTGGGACGGACCGCGAGTTCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGCGATAATTATTTAAAACCGTATGTGATATCGGAGCCGGAGGTGACAATAACGAATCGGACGGCGGAGGATGAGTGCTTGATTCTAGCGAGCGACGGGCTGTGGGATGTGGTGCCGAACGAGACGGCGTGTGGAGTGGCGAGCATGTGCCTTAGGGGGAAGACGGAGGAGAGGTCTCCGGTGTCACCGTCGGGGGAGGCGGAGACGGCGGCGGAAGGGGAGGAGCGAGGGAGCGCAGACAAGGCCTGCAACGATGCGTCGATGCTGCTGACGAAGCTGGCGTTGGCCAGGCACAGTACGGACAACGTGAGCGTCGTGGTGGTGGACCTTAAGAGGGACACGTACCCTTAG | 1545 | 55.4 | MRVKKEVSLLSRCSNLIGPRFHHLPKLILRVSSSDQPTPSQSTAQIFPFTTSRTLLPLRSARLSPVAVAVVVVVGIFRRLKGQGRLKNLVMAEICCKVMSESEASSSCEPSSRVARRRRMEIRRCKFVAGVAPSETETVAKRQKLEDRATSISRDCDNAVQNCDSGEEETVGRFVAGEVSTKEVSTPLSRESPSGEVIPKFGFSSVCGRRRDMEDAVAVHPSLCLTDKKATDMLHFFGVYDGHGCSHVAMRCKERLHELVKDELDREEKEDAAAAAEAEASRWDRAMKRIFWRMDNEVVARNNEEVVVANCRCELQSPDCDAVGSTAVVAIVTPDKIIVANCGDSRAVLCRNGKAIPLSSDHKPDRPDELSRIEEAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTITNRTAEDECLILASDGLWDVVPNETACGVASMCLRGKTEERSPVSPSGEAETAAEGEERGSADKACNDASMLLTKLALARHSTDNVSVVVVDLKRDTYP | 514 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1202141 | 1204188 | + | ClCG03G001230.2 | Cla03g00118 | 268618 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla03g00118 | 514 | Coils | Coil | 250 | 286 | - | - | |
Cla03g00118 | 514 | CDD | PP2Cc | 200 | 508 | IPR001932 | - | |
Cla03g00118 | 514 | ProSitePatterns | PPM-type phosphatase domain signature. | 236 | 244 | IPR000222 | GO:0043169 | |
Cla03g00118 | 514 | PANTHER | ALPHABET, ISOFORM E-RELATED | 132 | 511 | - | - | |
Cla03g00118 | 514 | Pfam | Protein phosphatase 2C | 200 | 476 | IPR001932 | - | |
Cla03g00118 | 514 | MobiDBLite | consensus disorder prediction | 453 | 478 | - | - | |
Cla03g00118 | 514 | Coils | Coil | 142 | 162 | - | - | |
Cla03g00118 | 514 | SMART | PP2C_4 | 190 | 506 | IPR001932 | - | |
Cla03g00118 | 514 | ProSiteProfiles | PPM-type phosphatase domain profile. | 200 | 508 | IPR001932 | - | |
Cla03g00118 | 514 | Gene3D | - | 190 | 512 | IPR036457 | - | |
Cla03g00118 | 514 | SUPERFAMILY | PP2C-like | 193 | 509 | IPR036457 | - | |
Cla03g00118 | 514 | PANTHER | PROTEIN PHOSPHATASE 2C 37 | 132 | 511 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla03g00118 | Cla-Chr3:1202141 | Cla08g00652 | Cla-Chr8:18724501 | 8.90E-40 | dispersed | |
Cla03g01554 | Cla-Chr3:31192193 | Cla03g00118 | Cla-Chr3:1202141 | 1.20E-78 | transposed | |
Cla05g00826 | Cla-Chr5:8086349 | Cla03g00118 | Cla-Chr3:1202141 | 4.96E-87 | transposed | |
Cla05g00958 | Cla-Chr5:9583656 | Cla03g00118 | Cla-Chr3:1202141 | 1.58E-74 | transposed | |
Cla07g00046 | Cla-Chr7:482117 | Cla03g00118 | Cla-Chr3:1202141 | 1.87E-16 | transposed | |
Cla07g01318 | Cla-Chr7:30357883 | Cla03g00118 | Cla-Chr3:1202141 | 2.53E-75 | transposed | |
Cla08g01003 | Cla-Chr8:22775029 | Cla03g00118 | Cla-Chr3:1202141 | 6.54E-70 | transposed | |
Cla09g00016 | Cla-Chr9:194518 | Cla03g00118 | Cla-Chr3:1202141 | 7.71E-45 | transposed | |
Cla11g00638 | Cla-Chr11:7319864 | Cla03g00118 | Cla-Chr3:1202141 | 1.98E-42 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla03g00118 | K14497 | - | csv:101206871 | 706.827 |