Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00118 ATGCGTGTCAAAAAGGAAGTCTCTCTCTTGTCGCGCTGCTCCAATCTTATTGGGCCACGTTTCCACCACCTCCCCAAACTAATTCTACGCGTGTCCTCTTCTGATCAACCCACCCCTTCTCAATCAACGGCTCAGATCTTTCCATTCACTACGTCACGCACTTTACTACCTCTTCGATCTGCCCGTCTCTCCCCGGTTGCCGTCGCCGTCGTCGTCGTCGTCGGCATATTTCGGAGATTGAAGGGGCAGGGGAGATTAAAGAACTTAGTAATGGCGGAGATTTGCTGTAAAGTGATGAGTGAGAGTGAGGCGTCGTCGTCCTGCGAGCCGAGCTCGCGAGTGGCTAGACGTCGGAGAATGGAGATCAGGAGGTGTAAATTTGTCGCCGGAGTTGCTCCGTCGGAGACTGAGACTGTTGCAAAGAGGCAGAAGCTGGAGGATCGAGCTACGTCAATATCCAGAGACTGTGATAACGCAGTCCAGAATTGTGATTCGGGAGAAGAAGAAACGGTCGGGAGATTTGTGGCCGGAGAGGTTTCGACGAAGGAGGTATCAACTCCTCTATCTCGGGAATCTCCCTCTGGCGAAGTGATTCCGAAGTTCGGATTCTCTTCTGTTTGTGGAAGGCGGAGAGATATGGAGGATGCGGTGGCGGTTCATCCATCGCTTTGTTTGACAGACAAGAAAGCCACCGATATGTTGCACTTCTTCGGTGTTTACGATGGCCATGGCTGCTCTCATGTGGCGATGAGGTGCAAGGAGCGGCTGCATGAACTGGTAAAAGATGAGTTGGATAGAGAAGAGAAGGAAGACGCCGCTGCTGCGGCAGAGGCGGAGGCGTCGCGGTGGGACCGTGCTATGAAGAGAATCTTCTGGCGAATGGACAACGAAGTTGTGGCGCGAAACAATGAAGAAGTTGTGGTTGCGAACTGTAGATGCGAGCTTCAGTCGCCGGATTGTGATGCCGTCGGATCTACCGCCGTCGTCGCAATTGTGACGCCGGATAAGATCATCGTCGCCAACTGCGGCGATTCCAGAGCCGTTCTCTGTCGCAACGGAAAGGCCATCCCTCTCTCCTCCGATCATAAGCCGGATCGTCCCGACGAACTTAGCCGAATCGAGGAAGCCGGTGGGCGAGTGATTTACTGGGACGGACCGCGAGTTCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGCGATAATTATTTAAAACCGTATGTGATATCGGAGCCGGAGGTGACAATAACGAATCGGACGGCGGAGGATGAGTGCTTGATTCTAGCGAGCGACGGGCTGTGGGATGTGGTGCCGAACGAGACGGCGTGTGGAGTGGCGAGCATGTGCCTTAGGGGGAAGACGGAGGAGAGGTCTCCGGTGTCACCGTCGGGGGAGGCGGAGACGGCGGCGGAAGGGGAGGAGCGAGGGAGCGCAGACAAGGCCTGCAACGATGCGTCGATGCTGCTGACGAAGCTGGCGTTGGCCAGGCACAGTACGGACAACGTGAGCGTCGTGGTGGTGGACCTTAAGAGGGACACGTACCCTTAG 1545 55.4 MRVKKEVSLLSRCSNLIGPRFHHLPKLILRVSSSDQPTPSQSTAQIFPFTTSRTLLPLRSARLSPVAVAVVVVVGIFRRLKGQGRLKNLVMAEICCKVMSESEASSSCEPSSRVARRRRMEIRRCKFVAGVAPSETETVAKRQKLEDRATSISRDCDNAVQNCDSGEEETVGRFVAGEVSTKEVSTPLSRESPSGEVIPKFGFSSVCGRRRDMEDAVAVHPSLCLTDKKATDMLHFFGVYDGHGCSHVAMRCKERLHELVKDELDREEKEDAAAAAEAEASRWDRAMKRIFWRMDNEVVARNNEEVVVANCRCELQSPDCDAVGSTAVVAIVTPDKIIVANCGDSRAVLCRNGKAIPLSSDHKPDRPDELSRIEEAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTITNRTAEDECLILASDGLWDVVPNETACGVASMCLRGKTEERSPVSPSGEAETAAEGEERGSADKACNDASMLLTKLALARHSTDNVSVVVVDLKRDTYP 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1202141 1204188 + ClCG03G001230.2 Cla03g00118 268618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00118 514 Coils Coil 250 286 - -
Cla03g00118 514 CDD PP2Cc 200 508 IPR001932 -
Cla03g00118 514 ProSitePatterns PPM-type phosphatase domain signature. 236 244 IPR000222 GO:0043169
Cla03g00118 514 PANTHER ALPHABET, ISOFORM E-RELATED 132 511 - -
Cla03g00118 514 Pfam Protein phosphatase 2C 200 476 IPR001932 -
Cla03g00118 514 MobiDBLite consensus disorder prediction 453 478 - -
Cla03g00118 514 Coils Coil 142 162 - -
Cla03g00118 514 SMART PP2C_4 190 506 IPR001932 -
Cla03g00118 514 ProSiteProfiles PPM-type phosphatase domain profile. 200 508 IPR001932 -
Cla03g00118 514 Gene3D - 190 512 IPR036457 -
Cla03g00118 514 SUPERFAMILY PP2C-like 193 509 IPR036457 -
Cla03g00118 514 PANTHER PROTEIN PHOSPHATASE 2C 37 132 511 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00118 Cla-Chr3:1202141 Cla08g00652 Cla-Chr8:18724501 8.90E-40 dispersed
Cla03g01554 Cla-Chr3:31192193 Cla03g00118 Cla-Chr3:1202141 1.20E-78 transposed
Cla05g00826 Cla-Chr5:8086349 Cla03g00118 Cla-Chr3:1202141 4.96E-87 transposed
Cla05g00958 Cla-Chr5:9583656 Cla03g00118 Cla-Chr3:1202141 1.58E-74 transposed
Cla07g00046 Cla-Chr7:482117 Cla03g00118 Cla-Chr3:1202141 1.87E-16 transposed
Cla07g01318 Cla-Chr7:30357883 Cla03g00118 Cla-Chr3:1202141 2.53E-75 transposed
Cla08g01003 Cla-Chr8:22775029 Cla03g00118 Cla-Chr3:1202141 6.54E-70 transposed
Cla09g00016 Cla-Chr9:194518 Cla03g00118 Cla-Chr3:1202141 7.71E-45 transposed
Cla11g00638 Cla-Chr11:7319864 Cla03g00118 Cla-Chr3:1202141 1.98E-42 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00118 K14497 - csv:101206871 706.827