Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00126 ATGGGAGAGGAGGTGAAGATGGCCGAATATGAGAGCGGTGGTGGCGGTGACGATGAAAACTGTGCTCATGAGGAGCGAGTAGTTGAATGGGAAACGGGTTTGCCTGACGCCGACGATCTCACTCCTCTGTCTCAGACTTTGATTCCGCCGGAGCTTGCATCAGCATTCAGTATATCGACAGGGCCATGTCGGACACTGATGGATGTTAATCGAGCATCGCAGAATACGCTATCGAATCTTCGTGGATTTCAAGCACAAGCGTTTTCGTCAAATAATTTCAAGTCGTTTAATGATGATCGGAGTCGGGATCATGATCCAATGGTGGTTGAAGGAGATGAGGCAACGGAGAGGGATGCAGGGTCTGATTCTAGGAAATTGAGAAAGGTTGATTGTACGGAGGAGGCTGATTCGGCTCTTCGGATGGATAATTCAATGGATGATCCATCGGCTCGGACTTTGAAGAGACCGAGGCTTGTATGGACGCCGCAATTACACAAGCGGTTTGTGGATGTTGTTGCTCATCTTGGAATTAAGAACGCGTGGAGGATGGGAGAGGAGGTGAAGATGGCCGAATATGAGAGCGGTGGTGGCGGTGACGATGAAAACTGTGCTCATGAGGAGCGAGTAGTTGAATGGGAAACGGGTTTGCCTGACGCCGACGATCTCACTCCTCTGTCTCAGACTTTGATTCCGCCGGAGCTTGCATCAGCATTCAGTATATCGACAGGGCCATGTCGGACACTGATGGATGTTAATCGAGCATCGCAGAATACGCTATCGAATCTTCGTGGATTTCAAGCACAAGCGTTTTCGTCAAATAATTTCAAGTCGTTTAATGATGATCGGAGTCGGGATCATGATCCAATGGTGGTTGAAGGAGATGAGGCAACGGAGAGGGATGCAGGGTCTGATTCTAGGAAATTGAGAAAGGTTGATTGTACGGAGGAGGCTGATTCGGCTCTTCGGATGGATAATTCAATGGATGATCCATCGGCTCGGACTTTGAAGAGACCGAGGCTTGTATGGACGCCGCAATTACACAAGCGGTTTGTGGATGTTGTTGCTCATCTTGGAATTAAGAACGCGGTTCCTAAAACTATTATGCAGTTAATGAATGTGGAGGGATTGACTCGGGAGAATGTTGCGAGTCATCTTCAGAAGTATAGGCTTTACTTGAAGAGGATGCAGGGATCTTCCAACGAAGGCCCGTCGTCGCCGGACCGGATTTTTGCGTCCACGCCTGTACCGCAGACCTTGCACGAGTCTACCAACAGTGGGCATGCCAATGGAAATGGGCATTTGCCAGTTCCAACTCCGATGCCGTATGGACCGCCAATGATGCCTATGCCGGTGCTTGGCATGGCAGCGTCTGGTCATGCACACAGTTATATGGGTATGCCGGTCGCTCATCCGGGAAGCGCACAGGCATACCCTGGCTTTGAAACGCATCCTTTCAACATGATGCATCAGAGAGATTGGTCGGGGAACAAATACGGCTCGATCGTGCCTTACCCTCATCCTCATGTACCTCCTAGTACTAATGATAAGTGA 1551 49.71 MGEEVKMAEYESGGGGDDENCAHEERVVEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTLMDVNRASQNTLSNLRGFQAQAFSSNNFKSFNDDRSRDHDPMVVEGDEATERDAGSDSRKLRKVDCTEEADSALRMDNSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAWRMGEEVKMAEYESGGGGDDENCAHEERVVEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTLMDVNRASQNTLSNLRGFQAQAFSSNNFKSFNDDRSRDHDPMVVEGDEATERDAGSDSRKLRKVDCTEEADSALRMDNSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRIFASTPVPQTLHESTNSGHANGNGHLPVPTPMPYGPPMMPMPVLGMAASGHAHSYMGMPVAHPGSAQAYPGFETHPFNMMHQRDWSGNKYGSIVPYPHPHVPPSTNDK 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1269309 1271850 - ClCG03G001320.1 Cla03g00126 268626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00126 516 MobiDBLite consensus disorder prediction 276 306 - -
Cla03g00126 516 Pfam Myb-like DNA-binding domain 341 389 IPR001005 -
Cla03g00126 516 MobiDBLite consensus disorder prediction 1 20 - -
Cla03g00126 516 SUPERFAMILY Homeodomain-like 334 394 IPR009057 -
Cla03g00126 516 MobiDBLite consensus disorder prediction 278 306 - -
Cla03g00126 516 MobiDBLite consensus disorder prediction 96 130 - -
Cla03g00126 516 Gene3D - 334 396 - -
Cla03g00126 516 Gene3D - 152 191 - -
Cla03g00126 516 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 183 503 IPR044841 GO:0003700|GO:0006355
Cla03g00126 516 PANTHER TRANSCRIPTION FACTOR LUX 1 180 - -
Cla03g00126 516 PANTHER TRANSCRIPTION FACTOR LUX 183 503 - -
Cla03g00126 516 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 342 393 IPR017930 -
Cla03g00126 516 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 338 390 IPR006447 GO:0003677
Cla03g00126 516 MobiDBLite consensus disorder prediction 94 130 - -
Cla03g00126 516 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 180 IPR044841 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g01948 Cla03g00126 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00126 Cla-Chr3:1269309 Cla04g00590 Cla-Chr4:19825042 3.71E-13 dispersed
Cla02g01948 Cla-Chr2:34576637 Cla03g00126 Cla-Chr3:1269309 2.05E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60764 PF00249 Myb_DNA-binding 2.50E-08 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00126 - - csv:101205712 632.484