Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00126 ATGGGAGAGGAGGTGAAGATGGCCGAATATGAGAGCGGTGGTGGCGGTGACGATGAAAACTGTGCTCATGAGGAGCGAGTAGTTGAATGGGAAACGGGTTTGCCTGACGCCGACGATCTCACTCCTCTGTCTCAGACTTTGATTCCGCCGGAGCTTGCATCAGCATTCAGTATATCGACAGGGCCATGTCGGACACTGATGGATGTTAATCGAGCATCGCAGAATACGCTATCGAATCTTCGTGGATTTCAAGCACAAGCGTTTTCGTCAAATAATTTCAAGTCGTTTAATGATGATCGGAGTCGGGATCATGATCCAATGGTGGTTGAAGGAGATGAGGCAACGGAGAGGGATGCAGGGTCTGATTCTAGGAAATTGAGAAAGGTTGATTGTACGGAGGAGGCTGATTCGGCTCTTCGGATGGATAATTCAATGGATGATCCATCGGCTCGGACTTTGAAGAGACCGAGGCTTGTATGGACGCCGCAATTACACAAGCGGTTTGTGGATGTTGTTGCTCATCTTGGAATTAAGAACGCGTGGAGGATGGGAGAGGAGGTGAAGATGGCCGAATATGAGAGCGGTGGTGGCGGTGACGATGAAAACTGTGCTCATGAGGAGCGAGTAGTTGAATGGGAAACGGGTTTGCCTGACGCCGACGATCTCACTCCTCTGTCTCAGACTTTGATTCCGCCGGAGCTTGCATCAGCATTCAGTATATCGACAGGGCCATGTCGGACACTGATGGATGTTAATCGAGCATCGCAGAATACGCTATCGAATCTTCGTGGATTTCAAGCACAAGCGTTTTCGTCAAATAATTTCAAGTCGTTTAATGATGATCGGAGTCGGGATCATGATCCAATGGTGGTTGAAGGAGATGAGGCAACGGAGAGGGATGCAGGGTCTGATTCTAGGAAATTGAGAAAGGTTGATTGTACGGAGGAGGCTGATTCGGCTCTTCGGATGGATAATTCAATGGATGATCCATCGGCTCGGACTTTGAAGAGACCGAGGCTTGTATGGACGCCGCAATTACACAAGCGGTTTGTGGATGTTGTTGCTCATCTTGGAATTAAGAACGCGGTTCCTAAAACTATTATGCAGTTAATGAATGTGGAGGGATTGACTCGGGAGAATGTTGCGAGTCATCTTCAGAAGTATAGGCTTTACTTGAAGAGGATGCAGGGATCTTCCAACGAAGGCCCGTCGTCGCCGGACCGGATTTTTGCGTCCACGCCTGTACCGCAGACCTTGCACGAGTCTACCAACAGTGGGCATGCCAATGGAAATGGGCATTTGCCAGTTCCAACTCCGATGCCGTATGGACCGCCAATGATGCCTATGCCGGTGCTTGGCATGGCAGCGTCTGGTCATGCACACAGTTATATGGGTATGCCGGTCGCTCATCCGGGAAGCGCACAGGCATACCCTGGCTTTGAAACGCATCCTTTCAACATGATGCATCAGAGAGATTGGTCGGGGAACAAATACGGCTCGATCGTGCCTTACCCTCATCCTCATGTACCTCCTAGTACTAATGATAAGTGA 1551 49.71 MGEEVKMAEYESGGGGDDENCAHEERVVEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTLMDVNRASQNTLSNLRGFQAQAFSSNNFKSFNDDRSRDHDPMVVEGDEATERDAGSDSRKLRKVDCTEEADSALRMDNSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAWRMGEEVKMAEYESGGGGDDENCAHEERVVEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTLMDVNRASQNTLSNLRGFQAQAFSSNNFKSFNDDRSRDHDPMVVEGDEATERDAGSDSRKLRKVDCTEEADSALRMDNSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRIFASTPVPQTLHESTNSGHANGNGHLPVPTPMPYGPPMMPMPVLGMAASGHAHSYMGMPVAHPGSAQAYPGFETHPFNMMHQRDWSGNKYGSIVPYPHPHVPPSTNDK 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1269309 1271850 - ClCG03G001320.1 Cla03g00126 268626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00126 516 MobiDBLite consensus disorder prediction 276 306 - -
Cla03g00126 516 Pfam Myb-like DNA-binding domain 341 389 IPR001005 -
Cla03g00126 516 MobiDBLite consensus disorder prediction 1 20 - -
Cla03g00126 516 SUPERFAMILY Homeodomain-like 334 394 IPR009057 -
Cla03g00126 516 MobiDBLite consensus disorder prediction 278 306 - -
Cla03g00126 516 MobiDBLite consensus disorder prediction 96 130 - -
Cla03g00126 516 Gene3D - 334 396 - -
Cla03g00126 516 Gene3D - 152 191 - -
Cla03g00126 516 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 183 503 IPR044841 GO:0003700|GO:0006355
Cla03g00126 516 PANTHER TRANSCRIPTION FACTOR LUX 1 180 - -
Cla03g00126 516 PANTHER TRANSCRIPTION FACTOR LUX 183 503 - -
Cla03g00126 516 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 342 393 IPR017930 -
Cla03g00126 516 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 338 390 IPR006447 GO:0003677
Cla03g00126 516 MobiDBLite consensus disorder prediction 94 130 - -
Cla03g00126 516 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 180 IPR044841 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00126 - - - csv:101205712 632.484
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla02g01948 Cla03g00126 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00126 Cla-Chr3:1269309 Cla04g00590 Cla-Chr4:19825042 3.71E-13 dispersed
Cla02g01948 Cla-Chr2:34576637 Cla03g00126 Cla-Chr3:1269309 2.05E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g486 . . . Bda09g01515 . . . . Cmo13g00108 . Cma01g00619 Cma13g00110 Car01g00563 Car13g00081 Sed14g0045 . Cpe20g00834 Bhi08g00576 Tan01g2411 Cmetu12g0038 . Hepe10g1262 . Lcy11g0162 Cla02g01948 Cam02g2065 Cec02g2102 Cco02g2133 Clacu02g2052 Cmu02g1993 Cre02g2302 Cone3ag0500 Cone10ag0471 . . Lsi02g01341 Csa06g01467 Chy11g01210 Cme11g01332 Blo13g01068 . . . Bpe08g00093 . Bma07g00088 . Sed01g0847 Cmo02g00786 Cmo20g00418 Cma02g00786 . Car02g00565 Car20g00334 . . Bhi10g00739 Tan05g0421 Cmetu11g1564 . Hepe10g1262 . . Cla03g00126 Cam03g0128 Cec03g0127 Cco03g0134 Clacu03g0131 Cmu03g0752 Cre03g0444 . Csa01g02442 Chy12g00223 Cme12g00152
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g02227 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.4e-42 168.3
Cla02g01833 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.6e-40 162.2
Cla07g00216 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 1.0e-39 161.0
Cla05g01126 . 246 446 G2-like Transcription Factor Family AT5G16560 56.5 8.3e-45 178.3
Cla09g01095 . 200 404 G2-like Transcription Factor Family AT5G16560 51.7 7.3e-41 165.2
Cla05g01991 CCT 1 167 G2-like Transcription Factor Family AT5G42630 58.3 7.6e-40 161.0
Cla08g01528 CCT 50 136 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Cla05g02327 . 19 256 G2-like Transcription Factor Family AT1G25550 55.4 5.7e-53 204.9
Cla08g00529 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.3e-52 201.4
Cla03g00126 CCT 183 451 G2-like Transcription Factor Family AT3G46640 51.7 3.3e-60 229.2
Cla04g00590 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.3e-74 275.0
Cla10g01569 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 7.2e-69 257.7
Cla09g02227 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.4e-42 168.3
Cla02g01833 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.6e-40 162.2
Cla07g00216 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 1.0e-39 161.0
Cla11g00689 . 2 228 G2-like Transcription Factor Family AT1G69580 56.0 9.4e-50 194.5
Cla09g02227 . 1 389 G2-like Transcription Factor Family AT1G79430 53.4 1.8e-83 306.6
Cla02g01833 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.6e-74 274.6
Cla04g00590 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.3e-91 333.6
Cla10g01569 . 1 283 G2-like Transcription Factor Family AT3G10760 57.8 5.4e-82 301.6
Cla04g00590 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.5e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001910 1 2 1 1 1 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 3 2 2 2 1 2 2 6 4 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60764 PF00249 Myb_DNA-binding 2.50E-08 CL0123 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00126 Cla_Chr03 FPKM 73.997368 72.381462 24.728731 28.024225 14.690876 20.643909 17.943769 29.798826 32.338219 31.228935