Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00138 ATGAGGGGTATAATTGTAAATTCTCACAAAAGGTCCTTCCCCTCCATAAGTACTCCCTCATCCCATCTTCCCCAAACGCCCACTTCTACTCTTTCTTCTCTCTTTTCAGTTATTAAACCCCAAAAAATGGCTAAAACCGCCATTCTCCTCTGCATTGCGACTATCATTTCAACAATGTGGACGGCCGGCGCCAGAATTCCCGGCGTCTACTCCGGTGGCCCATGGGAGAGTGCCCATGCCACGTTCTACGGCGGCTCCGATGCCTCCGGCACAATGGGTGGAGCTTGTGGGTATGGGAACTTGTACAGCCAAGGGTACGGAGTGAACACGGCGGCGTTGAGTACGGCGCTGTTTAACAATGGGCTGAGCTGCGGCGCCTGTTTCGAAATCAAATGTGCAAATGACCCGAGATGGTGCCATTCCGGCAGCCCGTCGATTATTATTACGGCCACTAATTTCTGTCCGCCGAACTTTGCTTTGCCCAGTGACAATGGCGGATGGTGTAATCCTCCTCGCCCGCATTTCGATTTGGCTATGCCTATGTTTCTTAAAATCGCTGAGTATCGCGCCGGAATCGTCCCCGTCGCCTACCGCCGAGTGGCATGCCGGAAGCAAGGGGGGATCCGGTTCACAATCCACGGGTTCAGATACTTCAACTTGGTGTTAATCACCAACGTCGCGGGTGCAGGGGATATCGTGAAGGTGAGCGTGAAAGGCACGCGCACCGGTTGGATGAGCATGAGCCGTAACTGGGGTCAAAACTGGCAGTCAAACGCCGTGTTGGTGGGCCAGGCCTTGTCTTTTAGAGTCACAGGCAGCGACAGACGGACTTCCACCTCCTTCAACGTGGCGCCTTCTGATTGGCAGTTCGGTCAGACCTTCACCGGCAAGAATTTTAGGGTTTGA 906 53.75 MRGIIVNSHKRSFPSISTPSSHLPQTPTSTLSSLFSVIKPQKMAKTAILLCIATIISTMWTAGARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIIITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVACRKQGGIRFTIHGFRYFNLVLITNVAGAGDIVKVSVKGTRTGWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSFNVAPSDWQFGQTFTGKNFRV 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1443303 1445552 + ClCG03G001450.2 Cla03g00138 268638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00138 301 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 93 207 IPR007112 -
Cla03g00138 301 Gene3D - 63 203 IPR036908 -
Cla03g00138 301 Gene3D - 207 299 IPR036749 -
Cla03g00138 301 PRINTS Expansin/Lol pI family signature 114 132 IPR007118 GO:0005576
Cla03g00138 301 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Cla03g00138 301 PRINTS Expansin/Lol pI family signature 74 89 IPR007118 GO:0005576
Cla03g00138 301 PRINTS Expansin/Lol pI family signature 190 206 IPR007118 GO:0005576
Cla03g00138 301 PRINTS Expansin/Lol pI family signature 282 296 IPR007118 GO:0005576
Cla03g00138 301 PRINTS Expansin/Lol pI family signature 92 110 IPR007118 GO:0005576
Cla03g00138 301 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 217 296 IPR007117 -
Cla03g00138 301 SUPERFAMILY Barwin-like endoglucanases 74 225 IPR036908 -
Cla03g00138 301 PRINTS Expansin signature 132 143 IPR002963 GO:0009664
Cla03g00138 301 PRINTS Expansin signature 218 239 IPR002963 GO:0009664
Cla03g00138 301 PRINTS Expansin signature 206 218 IPR002963 GO:0009664
Cla03g00138 301 PRINTS Expansin signature 165 182 IPR002963 GO:0009664
Cla03g00138 301 PRINTS Expansin signature 253 274 IPR002963 GO:0009664
Cla03g00138 301 PRINTS Expansin signature 105 119 IPR002963 GO:0009664
Cla03g00138 301 PRINTS Expansin signature 146 156 IPR002963 GO:0009664
Cla03g00138 301 PRINTS Expansin signature 282 298 IPR002963 GO:0009664
Cla03g00138 301 PRINTS Expansin signature 182 195 IPR002963 GO:0009664
Cla03g00138 301 MobiDBLite consensus disorder prediction 10 26 - -
Cla03g00138 301 Pfam Expansin C-terminal domain 208 285 IPR007117 -
Cla03g00138 301 PANTHER EXPANSIN 45 300 - -
Cla03g00138 301 MobiDBLite consensus disorder prediction 1 26 - -
Cla03g00138 301 PANTHER EXPANSIN-A15 45 300 IPR002963 GO:0009664
Cla03g00138 301 SUPERFAMILY PHL pollen allergen 204 296 IPR036749 -
Cla03g00138 301 Pfam Lytic transglycolase 110 197 IPR009009 -
Cla03g00138 301 SMART dpbb_1 110 197 IPR007112 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g01959 Cla03g00138 CCT
Cla02g01959 Cla03g00138 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00138 Cla-Chr3:1443303 Cla09g01916 Cla-Chr9:36830486 4.22E-129 dispersed
Cla02g00329 Cla-Chr2:3219680 Cla03g00138 Cla-Chr3:1443303 1.72E-91 transposed
Cla02g01959 Cla-Chr2:34678805 Cla03g00138 Cla-Chr3:1443303 2.40E-168 wgd
Cla03g00138 Cla-Chr3:1443303 Cla04g00803 Cla-Chr4:23068149 5.36E-170 wgd
Cla03g00138 Cla-Chr3:1443303 Cla07g00313 Cla-Chr7:3591610 1.53E-164 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00138 - - csv:101206662 529.635