Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00152 ATGGAGGAAGATAACGGCGCTCTTATTCAGAGTCTGATCGATGTAGTGAATGAGATTGCTTGGATCTCGGATTTTAGGTATACTGTTAAGAAGCAGTATTGTAATTTGTCCAGGAGATTGAAGCTTCTGATCCCAATGTTCGAAGAGATTAGAGACAGTAAAGAGCCTGTTTCTGAGGATACTCTTAACGCTCTCGTACTGTTGAAAGAAGCTCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCGAAGGGAGCAAGATTTTCCTGGCCGTAGAGAGGGAGCAAATTATGAACAAATTTCATGAGGTAACTGCTCGGTTGGAACAAGCGTTGGAAGGAATAGCCTATGATAAACTTGATATATCCGATGAAGTTAAAGAGCAGATCTTCCTCTGTGTTTATCTCAACTGGATATTAGATATCGGAAGGGCCAAAGGCAGGGCCGATGCTCCTGACTCTGAGCTGTTGGATGATATCCTTGCCCTTTACAACACGAGCAATGATTCTTCTATAGATCAAGACCGCCTAAGGAGACTGTCCGAAAAATTACAGTTAGTTGGAATATCTGATCTTACACAAGAGTCAATAGCTTTGCATGAGATGGTTTCTGCTACTGATGGGGATCCAGGCGAGAGCATTGAGAAGATGGCAGGGCTGCTAAAGAAAATAAAAGATTTCGTGCAAACAGAGAGCCTCGAAACGGACACTCCTAGTAGAGAAAAGAGTCCTCCAGCAAGTTGTAGTGGACAGGTATCCAATGACAAAAATAACAAGGCCCCAATTATACCAGATGATTTTCGCTGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAAGCAGGGCATGGGACGTGTCCAAAGACACAACAAAACCTTTCAAGCACTACTCTTACCCCAAATTATGTGTTGCGTAGCCTTATAGCCCAATGGTGCGAGGCTAATGGTATCGAACCACCAAAACGACCCAGCAGTGCTCGACCATGTAGAAGCTCTTCATCTTGCTCACCTGCTGAACGCACAAAGATTGATATTCTTCTTTGCAAACTTGCATCTGGAAATCCTGAAGATCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCAAAACGGAACGCAGATAATCGCGTTGCTATTGCCGAGGCAGGTGCTATACCTCTCCTTGTCGGCCTTCTTTCAACTCCAGACTCCCGTGTTCAAGAGCATGCTGTAACAGCACTTCTTAACCTTTCTATATGCGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATTGTTCTCGTGCTTAAGAAGGGGAGCATGGAAGCACGGGAAAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTTGATGAAAATAAAGTTAGGATTGGTGCCTCCGGAGCTATCCCGCCGCTTGTAACACTGCTTAGTGAAGGCACGCAAAGGGGTAAGAAAGATGCTGCAACTGCACTTTTCAACTTATGCATCTACCAAGGAAACAAAGGCAAGGCAGTTAGAGCTGGTGTAGTTCCAACCTTAATGCAGCTTCTCACTGAGCCCGGAACCGGAATGGTGGATGAAGCCTTAGCCATCTTAGCAATACTTGCTAGCCATCCTGAAGGGAAAGCTGCCATTGGATCCGCAAAGGCAGTGCCGGTTTTGGTAGGTGTTATTGGGACAGGATCCCCCAGGAACAGAGAGAATGCGGCTGCAGTTCTTGTGCACCTGTGCTCGGGAGACGAGCAACACCTAGTAGAGGCCAGGGAACTTGGAGTGATCAGTCCATTGATAGATTTGGCACGCAGTGGCACAGATAGAGGAAAGCGAAAAGCTGCACAGTTGCTTGAACGAATGAACCGACTGTTTGAGCACGCGGCGCATCAGGAGGAGCTTCGGGTGCTTCGGTTACAATCGTCGGAGTCTCAACCTCAAAGCCAGCCATCACAATCAACATCGACAACGGAAGTCGTTGGTAGCTGA 2028 46.94 MEEDNGALIQSLIDVVNEIAWISDFRYTVKKQYCNLSRRLKLLIPMFEEIRDSKEPVSEDTLNALVLLKEALESAKKLLRFGSEGSKIFLAVEREQIMNKFHEVTARLEQALEGIAYDKLDISDEVKEQIFLCVYLNWILDIGRAKGRADAPDSELLDDILALYNTSNDSSIDQDRLRRLSEKLQLVGISDLTQESIALHEMVSATDGDPGESIEKMAGLLKKIKDFVQTESLETDTPSREKSPPASCSGQVSNDKNNKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHPEGKAAIGSAKAVPVLVGVIGTGSPRNRENAAAVLVHLCSGDEQHLVEARELGVISPLIDLARSGTDRGKRKAAQLLERMNRLFEHAAHQEELRVLRLQSSESQPQSQPSQSTSTTEVVGS 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1576062 1580937 + ClCG03G001600.2 Cla03g00152 268652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00152 675 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 401 443 IPR000225 GO:0005515
Cla03g00152 675 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 651 - -
Cla03g00152 675 SUPERFAMILY RING/U-box 260 339 - -
Cla03g00152 675 SUPERFAMILY ARM repeat 361 634 IPR016024 -
Cla03g00152 675 CDD RING-Ubox_PUB 267 309 IPR045210 -
Cla03g00152 675 Pfam Armadillo/beta-catenin-like repeat 555 594 IPR000225 GO:0005515
Cla03g00152 675 Pfam Armadillo/beta-catenin-like repeat 473 511 IPR000225 GO:0005515
Cla03g00152 675 Pfam Armadillo/beta-catenin-like repeat 390 429 IPR000225 GO:0005515
Cla03g00152 675 MobiDBLite consensus disorder prediction 239 258 - -
Cla03g00152 675 Gene3D - 7 117 IPR036537 GO:0007166
Cla03g00152 675 SMART arm_5 596 636 IPR000225 GO:0005515
Cla03g00152 675 SMART arm_5 472 512 IPR000225 GO:0005515
Cla03g00152 675 SMART arm_5 554 594 IPR000225 GO:0005515
Cla03g00152 675 SMART arm_5 513 553 IPR000225 GO:0005515
Cla03g00152 675 SMART arm_5 390 430 IPR000225 GO:0005515
Cla03g00152 675 SMART arm_5 431 471 IPR000225 GO:0005515
Cla03g00152 675 Pfam U-box domain 263 333 IPR003613 GO:0004842|GO:0016567
Cla03g00152 675 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 524 566 IPR000225 GO:0005515
Cla03g00152 675 ProSiteProfiles U-box domain profile. 262 336 IPR003613 GO:0004842|GO:0016567
Cla03g00152 675 Gene3D - 548 669 IPR011989 -
Cla03g00152 675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Cla03g00152 675 Gene3D - 351 547 IPR011989 -
Cla03g00152 675 PANTHER U BOX DOMAIN-CONTAINING 6 651 - -
Cla03g00152 675 MobiDBLite consensus disorder prediction 231 261 - -
Cla03g00152 675 MobiDBLite consensus disorder prediction 651 675 - -
Cla03g00152 675 SMART Ubox_2 266 329 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g01975 Cla03g00152 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01224 Cla-Chr2:25911001 Cla03g00152 Cla-Chr3:1576062 4.35E-11 dispersed
Cla03g00152 Cla-Chr3:1576062 Cla03g00696 Cla-Chr3:8402840 2.19E-91 dispersed
Cla05g01690 Cla-Chr5:28626634 Cla03g00152 Cla-Chr3:1576062 1.05E-29 dispersed
Cla06g00447 Cla-Chr6:5454321 Cla03g00152 Cla-Chr3:1576062 3.90E-10 dispersed
Cla08g01363 Cla-Chr8:26470034 Cla03g00152 Cla-Chr3:1576062 5.04E-26 dispersed
Cla09g00729 Cla-Chr9:7190638 Cla03g00152 Cla-Chr3:1576062 1.74E-09 dispersed
Cla01g00596 Cla-Chr1:6813192 Cla03g00152 Cla-Chr3:1576062 4.60E-116 transposed
Cla01g01861 Cla-Chr1:33447362 Cla03g00152 Cla-Chr3:1576062 1.09E-07 transposed
Cla01g02188 Cla-Chr1:35919918 Cla03g00152 Cla-Chr3:1576062 1.55E-59 transposed
Cla02g00969 Cla-Chr2:15787377 Cla03g00152 Cla-Chr3:1576062 2.01E-164 transposed
Cla05g01861 Cla-Chr5:30488161 Cla03g00152 Cla-Chr3:1576062 6.90E-16 transposed
Cla05g02163 Cla-Chr5:33214404 Cla03g00152 Cla-Chr3:1576062 0 transposed
Cla05g02371 Cla-Chr5:35272179 Cla03g00152 Cla-Chr3:1576062 2.91E-18 transposed
Cla07g00605 Cla-Chr7:11031387 Cla03g00152 Cla-Chr3:1576062 2.59E-163 transposed
Cla08g00936 Cla-Chr8:21887805 Cla03g00152 Cla-Chr3:1576062 5.97E-19 transposed
Cla08g01687 Cla-Chr8:29483155 Cla03g00152 Cla-Chr3:1576062 1.15E-53 transposed
Cla11g00578 Cla-Chr11:6545632 Cla03g00152 Cla-Chr3:1576062 5.12E-116 transposed
Cla11g01354 Cla-Chr11:27032664 Cla03g00152 Cla-Chr3:1576062 2.32E-48 transposed
Cla11g01545 Cla-Chr11:29151922 Cla03g00152 Cla-Chr3:1576062 4.03E-06 transposed
Cla02g01975 Cla-Chr2:34817875 Cla03g00152 Cla-Chr3:1576062 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00152 - - csv:101218572 1124.0