Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00153 ATGCGATTCTCCACCTTGGTTTTTCCTAAAGACACATCCAATTTTTACTTTATAAAAAGAGATATCAACCCCCCCATGGATTTCTCTTCTGTTCCAATCTATTTAGATCCTCCTCCCAATTGGCACCAGCAATCAAATCATCATCATCACCACCATCCTCAGATAAGTAGTAATAATAATGGATCTCCTCAACACCAACACCACCTTCTTTCATTGCCTACTCAGCAACTCTCCTCCTCACCGTTGTCTCATGTCGGTGGTGGCGGTGGTGTTAGCTCAATCCGGCGTGGTTCGATGGCGGACCGAGCTCGGATGGCTAACGTACCACTACCGGAGACAGCACTCAAGTGTCCTCGATGTGATTCAACCAACACGAAGTTTTGTTACTTTAATAACTATAGTCTCTCTCAGCCTCGCCACTTTTGTAAGAGCTGCCGCCGATATTGGACTCGTGGGGGTGCCCTAAGGAACGTTCCAGTTGGGGGCGGTTGTCGCCGGAATAAGAAGAATAAAACTAGACGCTCGAAGTCTCCGGCTGCAGCTCCGGCCGGAAATGAAACTCAAGTGATGAATAACAATTCAAACTCACCCACCACTACTACAATACCCTTGCACAGTAGTGCTGAGAATATTATTGGTCATTTACAGCCTCAACATCCTCACCTTTCATTCATGGCTTCATTGAATAATTTTTCTCGATACGGGACAACGAGTTTAGGGTTGAATTTCAACGAGATCCAGGCTCAAGGTAACGATATCGGCAACGGCGCCCTTCTGAATCATCATCTGTGGCGTGGTTCCCAAAACTTTCCTCTCTCAGGTGGCCTAGAAACTCCACCCGGGTTGTACCCGTTTCAAATTAGCGGCGGGGACGGCGACGACAACACAACAAATTCAATCCTAACACCAAATTCAAGGGCAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGTTGAAATCATCCAATTTGGGTATCAATAATTCTGAAAACAATCAATTTTGGAGCAATGGAAATGGTTGGACAGATCTTTCAGCTATCAGTTCTACTTCAAGTGGCCATATTTCTTGTGACTTCAATCATTAG 1101 45.32 MRFSTLVFPKDTSNFYFIKRDINPPMDFSSVPIYLDPPPNWHQQSNHHHHHHPQISSNNNGSPQHQHHLLSLPTQQLSSSPLSHVGGGGGVSSIRRGSMADRARMANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNKKNKTRRSKSPAAAPAGNETQVMNNNSNSPTTTTIPLHSSAENIIGHLQPQHPHLSFMASLNNFSRYGTTSLGLNFNEIQAQGNDIGNGALLNHHLWRGSQNFPLSGGLETPPGLYPFQISGGDGDDNTTNSILTPNSRATHLPPVKIEETQVLNLLKSSNLGINNSENNQFWSNGNGWTDLSAISSTSSGHISCDFNH 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1596413 1598434 + ClCG03G001610.1 Cla03g00153 268653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00153 366 MobiDBLite consensus disorder prediction 181 196 - -
Cla03g00153 366 Pfam Dof domain, zinc finger 114 169 IPR003851 GO:0003677|GO:0006355
Cla03g00153 366 MobiDBLite consensus disorder prediction 161 196 - -
Cla03g00153 366 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 64 357 - -
Cla03g00153 366 ProSiteProfiles Zinc finger Dof-type profile. 115 169 IPR003851 GO:0003677|GO:0006355
Cla03g00153 366 MobiDBLite consensus disorder prediction 37 68 - -
Cla03g00153 366 ProSitePatterns Zinc finger Dof-type signature. 117 153 IPR003851 GO:0003677|GO:0006355
Cla03g00153 366 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 64 357 IPR045174 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g01976 Cla03g00153 CCT
Cla02g01976 Cla03g00153 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00153 Cla-Chr3:1596413 Cla07g00304 Cla-Chr7:3441324 1.26E-60 dispersed
Cla07g01294 Cla-Chr7:30051808 Cla03g00153 Cla-Chr3:1596413 8.76E-14 dispersed
Cla10g00793 Cla-Chr10:16256294 Cla03g00153 Cla-Chr3:1596413 7.94E-34 dispersed
Cla01g01626 Cla-Chr1:31059852 Cla03g00153 Cla-Chr3:1596413 2.14E-32 transposed
Cla06g01522 Cla-Chr6:28771195 Cla03g00153 Cla-Chr3:1596413 5.90E-32 transposed
Cla02g01976 Cla-Chr2:34830258 Cla03g00153 Cla-Chr3:1596413 1.05E-45 wgd
Cla02g02034 Cla-Chr2:35380992 Cla03g00153 Cla-Chr3:1596413 3.08E-35 wgd
Cla03g00153 Cla-Chr3:1596413 Cla04g00818 Cla-Chr4:23231374 4.92E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60766 PF02701 zf-Dof 1.60E-32 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00153 - - csv:101218334 530.406