Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00153 ATGCGATTCTCCACCTTGGTTTTTCCTAAAGACACATCCAATTTTTACTTTATAAAAAGAGATATCAACCCCCCCATGGATTTCTCTTCTGTTCCAATCTATTTAGATCCTCCTCCCAATTGGCACCAGCAATCAAATCATCATCATCACCACCATCCTCAGATAAGTAGTAATAATAATGGATCTCCTCAACACCAACACCACCTTCTTTCATTGCCTACTCAGCAACTCTCCTCCTCACCGTTGTCTCATGTCGGTGGTGGCGGTGGTGTTAGCTCAATCCGGCGTGGTTCGATGGCGGACCGAGCTCGGATGGCTAACGTACCACTACCGGAGACAGCACTCAAGTGTCCTCGATGTGATTCAACCAACACGAAGTTTTGTTACTTTAATAACTATAGTCTCTCTCAGCCTCGCCACTTTTGTAAGAGCTGCCGCCGATATTGGACTCGTGGGGGTGCCCTAAGGAACGTTCCAGTTGGGGGCGGTTGTCGCCGGAATAAGAAGAATAAAACTAGACGCTCGAAGTCTCCGGCTGCAGCTCCGGCCGGAAATGAAACTCAAGTGATGAATAACAATTCAAACTCACCCACCACTACTACAATACCCTTGCACAGTAGTGCTGAGAATATTATTGGTCATTTACAGCCTCAACATCCTCACCTTTCATTCATGGCTTCATTGAATAATTTTTCTCGATACGGGACAACGAGTTTAGGGTTGAATTTCAACGAGATCCAGGCTCAAGGTAACGATATCGGCAACGGCGCCCTTCTGAATCATCATCTGTGGCGTGGTTCCCAAAACTTTCCTCTCTCAGGTGGCCTAGAAACTCCACCCGGGTTGTACCCGTTTCAAATTAGCGGCGGGGACGGCGACGACAACACAACAAATTCAATCCTAACACCAAATTCAAGGGCAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGTTGAAATCATCCAATTTGGGTATCAATAATTCTGAAAACAATCAATTTTGGAGCAATGGAAATGGTTGGACAGATCTTTCAGCTATCAGTTCTACTTCAAGTGGCCATATTTCTTGTGACTTCAATCATTAG 1101 45.32 MRFSTLVFPKDTSNFYFIKRDINPPMDFSSVPIYLDPPPNWHQQSNHHHHHHPQISSNNNGSPQHQHHLLSLPTQQLSSSPLSHVGGGGGVSSIRRGSMADRARMANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNKKNKTRRSKSPAAAPAGNETQVMNNNSNSPTTTTIPLHSSAENIIGHLQPQHPHLSFMASLNNFSRYGTTSLGLNFNEIQAQGNDIGNGALLNHHLWRGSQNFPLSGGLETPPGLYPFQISGGDGDDNTTNSILTPNSRATHLPPVKIEETQVLNLLKSSNLGINNSENNQFWSNGNGWTDLSAISSTSSGHISCDFNH 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1596413 1598434 + ClCG03G001610.1 Cla03g00153 268653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00153 366 MobiDBLite consensus disorder prediction 181 196 - -
Cla03g00153 366 Pfam Dof domain, zinc finger 114 169 IPR003851 GO:0003677|GO:0006355
Cla03g00153 366 MobiDBLite consensus disorder prediction 161 196 - -
Cla03g00153 366 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 64 357 - -
Cla03g00153 366 ProSiteProfiles Zinc finger Dof-type profile. 115 169 IPR003851 GO:0003677|GO:0006355
Cla03g00153 366 MobiDBLite consensus disorder prediction 37 68 - -
Cla03g00153 366 ProSitePatterns Zinc finger Dof-type signature. 117 153 IPR003851 GO:0003677|GO:0006355
Cla03g00153 366 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 64 357 IPR045174 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00153 - - - csv:101218334 530.406
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla02g01976 Cla03g00153 CCT
Cla02g01976 Cla03g00153 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00153 Cla-Chr3:1596413 Cla07g00304 Cla-Chr7:3441324 1.26E-60 dispersed
Cla07g01294 Cla-Chr7:30051808 Cla03g00153 Cla-Chr3:1596413 8.76E-14 dispersed
Cla10g00793 Cla-Chr10:16256294 Cla03g00153 Cla-Chr3:1596413 7.94E-34 dispersed
Cla01g01626 Cla-Chr1:31059852 Cla03g00153 Cla-Chr3:1596413 2.14E-32 transposed
Cla06g01522 Cla-Chr6:28771195 Cla03g00153 Cla-Chr3:1596413 5.90E-32 transposed
Cla02g01976 Cla-Chr2:34830258 Cla03g00153 Cla-Chr3:1596413 1.05E-45 wgd
Cla02g02034 Cla-Chr2:35380992 Cla03g00153 Cla-Chr3:1596413 3.08E-35 wgd
Cla03g00153 Cla-Chr3:1596413 Cla04g00818 Cla-Chr4:23231374 4.92E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g427 . Blo03g01238 . . . Bpe08g01366 Bma14g00500 Bma07g01538 Cmo13g00132 . Cma01g00595 Cma13g00133 Car01g00540 Car13g00103 Sed08g2509 Cpe05g00913 Cpe20g00813 Bhi08g00258 Tan01g2611 Cmetu12g0765 . Hepe10g1082 . . Cla02g01976 Cam02g2096 Cec02g2134 Cco02g2164 Clacu02g2084 Cmu02g2021 Cre02g2330 Cone1ag0649 Cone5ag1158 . . Lsi02g01364 Csa06g01499 Chy11g01243 Cme11g01283 . . . Bda09g00153 . . . . Sed01g0886 . Cmo20g00451 Cma02g00812 . Car02g00587 . . . Bhi10g00686 Tan05g0376 Cmetu11g2570 . Hepe10g1221 . . Cla03g00153 Cam03g0159 Cec03g0158 Cco03g0165 Clacu03g0162 Cmu03g0779 Cre03g0474 . Csa01g02399 Chy12g00184 Cme12g00200
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla03g00724 CCT 17 179 C2C2-Dof Transcription Factor Family AT1G29160 58.0 8.1e-45 177.2
Cla01g02318 CCT 6 159 C2C2-Dof Transcription Factor Family AT1G29160 52.0 7.8e-40 160.6
Cla01g00159 . 17 104 C2C2-Dof Transcription Factor Family AT1G64620 75.8 7.3e-37 151.8
Cla03g00724 CCT 17 179 C2C2-Dof Transcription Factor Family AT2G34140 55.6 2.5e-43 172.2
Cla10g02000 CCT,ECH 64 196 C2C2-Dof Transcription Factor Family AT2G37590 66.7 1.3e-40 164.1
Cla09g01940 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 60.4 2.1e-38 156.8
Cla03g00153 CCT,ECH 93 167 C2C2-Dof Transcription Factor Family AT2G37590 89.3 5.2e-37 152.1
Cla06g01588 CCT,ECH 185 536 C2C2-Dof Transcription Factor Family AT3G47500 53.4 6.1e-89 325.1
Cla01g00159 . 17 102 C2C2-Dof Transcription Factor Family AT4G24060 79.2 9.9e-39 157.9
Cla10g01453 . 212 591 C2C2-Dof Transcription Factor Family AT5G39660 53.7 2.8e-81 299.7
Cla10g02000 CCT,ECH 64 196 C2C2-Dof Transcription Factor Family AT5G02460 67.3 1.4e-39 161.0
Cla03g00153 CCT,ECH 94 167 C2C2-Dof Transcription Factor Family AT5G02460 90.5 5.7e-38 155.6
Cla09g01940 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 61.4 1.4e-36 151.0
Cla10g02000 CCT,ECH 117 199 C2C2-Dof Transcription Factor Family AT3G55370 81.9 2.0e-37 153.7
Cla02g01976 CCT,ECH 195 343 C2C2-Dof Transcription Factor Family AT3G55370 54.0 5.9e-37 152.1
Cla04g00818 CCT,ECH 11 129 C2C2-Dof Transcription Factor Family AT3G55370 64.7 1.3e-36 151.0
Cla06g01522 . 28 324 C2C2-Dof Transcription Factor Family AT5G60850 53.3 1.5e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005685 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60766 PF02701 zf-Dof 1.60E-32 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00153 Cla_Chr03 FPKM 8.332694 8.003995 10.395805 11.375525 8.588554 9.190343 8.218176 12.529756 15.057266 14.338621