Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00170 ATGGGTAGAGGCGGGGAAAACTACGGGAAAAAAGAGATTTTTGCTGCTACCTCATCGAAGAAAGAAACGTATCCTGCCTGGGCAAAGGATGTTCGAGAATGTGTAGAGAAGTATCAAGTGAACCCTGATCTTGGATTATCATCTGAAGAGGTTGAAAACAAGAGAAAGATCTATGGTTACAATGAGTTGGAGAAACATGAAGGTACTTCAATCTTCAAACTGATTTTGGAACAATTTAATGACACACTAGTTAGGATTCTATTAGCTGCAGCAGTTGTATCTTTTGTTCTTGCTTGGTATGATGGCGAGGAAGGAGGTGAGATGGAGATCACAGCATTTGTGGAGCCTCTAGTTATTTTCTTGATATTGATTGTCAATGCCATTGTTGGCATTTGGCAAGAGAACAATGCTGAGAAAGCATTGGAAGCTCTCAAAGAAATTCAGTCTGAACAGGCTTCTGTAATACGAAATGGTAAACGAACTTCAATTGTTGCAAAAGATCTTGTTCCTGGTGATATAGTAGAACTCAGAGTTGGGGATAAGGTGCCTGCTGACATGCGAGTATTGCGTTTAGTCAGCTCTACTTTTCGGGTTGAGCAAGGTTCCTTGACAGGCGAGAGTGAAGCAGTGAGCAAGACTGCTAAGGCTGTGCCAGAAGATACAGATATACAAGGGAAAAAGTGTATGGTTTTTGCAGGGACAACAGTTGTCAATGGAAACTGTATTTGCGTTGTTACCCAAACAGGAATGAGCACTGAACTCGGACAGGTACATTCTCAGATACAAGAAGCATCCCAGAGTGAAGATGATACGCCATTAAAGAAAAAGTTGAATGAGTTTGGAGAGCTTTTAACAGCAATAATTGGAGTGATCTGTGCTCTAGTTTGGCTTATTAATGTCAAATACTTCCTCACTTGGGAATATGTTGATGGTTGGCCTGCAAATTTCAAGTTCTCATTTGAGAAATGTACATATTACTTTGAGATTGCTGTGGCATTGGCTGTAGCTGCAATTCCAGAAGGTTTGCCTGCGGTCATAACAACATGCTTGGCTCTTGGCACTCGGAAAATGGCCCAAAAGAATGCCCTTGTTCGTAAGCTGCCTAGTGTTGAAACACTTGGCTGTACAACTGTGATATGTTCTGATAAGACAGGTACTCTAACAACAAATCAGATGGCTGTGGCGAAAATTGTTGCTCTTGGTTCTCGTGTTGGTACTCTAAGAGCTTTTGATGTGGAGGGGACTACATATGATCCTTTAGATGGAAAAATAATTGGTTGGCTTGGAGGTCAATTGGATGCTAATCTACAAATGGTGGCAAAGATTGCTGCAGTCTGTAATGATGCAGGTGTTGAAAGATCTGGCCATCATTTTGTTGCAAATGGAATGCCTACTGAAGCAGCATTGAAGCACGTAATGTTTGATAAGCTTCTTTATGTTGTTCCATGGATCTGCCTGTTGATAAAGACAAACTTTGTTTCTGATGCCTTTTATCTGAATGTTAAGGTTCTTGTGGAAAAGATGGGGCTTCCTGAAGGTTATGACTCAAGTTCAGCTACTGTTAATGGGGATGTCCTGCGATGCTGCCAAACTTGGAATAAGAATGAGCAACGCATTGCTACTTTGGAGTTTGACCGAGACCGCAAGTCCATGGGAGTTATCACAAATTCTAACTCAGGGAAGAAATCATTACTCGTGAAGGGTGCTGTTGAAAATCTTTTGGATCGGAGTTCATTTATTCAGCTTCTTGATGGAACTATAGTGAATTTGGACTCAGACTCGAAGAGATACCTCTTAGATTGTTTGCGTGAGATGTCATCTAGTGCATTGAGGTGTCTAGGTTTTGCATACAAGGAAGATCTTCCAGAATTTTCCGATTATAATATTGGTGACGAAGACCATCCAGCACATCAGCTTCTACTTGACCCGTCCAAATACTCTACAATTGAAAGTAATCTTATTTTTGCTGGCTTTGTTGGGTTAAGGGATCCTCCTCGAAAAGAGGTTCATCAAGCAATTGAAGACTGTAAAGCTGCTGGTATTCGTGTCATGGTTATCACAGGGGACAACCAGAACACAGCTGAAGCTATATGTCGAGAAATAGGTGTATTTGGACAATATGAAGCTATAAATTCCAGAAGTTTAACTGGAAAAGAATTCATGGCAATGAGCCGGGAGGATCAAAAATTTCATCTAAGACAAGATGGAGGACTTCTTTTCTCGAGGGCTGAACCAAGACATAAACAAGAGATAGTAAGATTGCTCAAGGAAGATGGTGAAGTTGTTGCAATGACAGGAGATGGAGTCAATGATGCACCTGCCTTGAAGTTGGCTGATATTGGGATTGCGATGGGGATTGCTGGGACAGAGGTTGCAAAGGAAGCCTCCGACATGGTTCTTGCAGATGACAATTTTAGTACCATAGTCGCAGCTGTTGGTGAAGGCAGATCGATTTATGACAATATGAAGGCCTTTATCAGGTACATGATTTCCTCGAATATCGGCGAGGTTGCATCGATATTTTTGACAGCAGCACTGGGTATTCCCGAAGGGATGATCCCTGTTCAGCTTCTCTGGGTTAATCTTGTTACAGATGGACCCCCAGCAACTGCGTTGGGATTTAATCCACCTGATGCCGATATAATGAAGAAACCGCCAAGGAAAAGTGATGACTCGTTGATCACGGCCTGGATTTTGTTCCGCTATTTGGTGATTGGACTTTACGTAGGGTTAGCAACTGTAGGAGTATTTATTATTTGGTATACACACGGTTCATTCTTGGGCATCGACCTGTCTGGAGATGGTCACAGTCTGGTCTCTTACTCTCAGCTCGCCAACTGGGGTCAGTGCCCGTCCTGGGAAGGATTCTCCGTGTCGCCCTTCACGGCTGGGGATGAAGTCTTCAGTTTCGATTCAGATCCATGCGAGTACTTCCGCTCAGGCAAGATCAAGGCATCAACCCTCTCACTCTCTGTTTTGGTTGCCATTGAGATGTTCAATTCCCTCAATGCCCTCTCCGAGGATGGAAGCTTGTTGACAATGCCCCCTTGGGTTAACCCCTGGCTCCTCCTCGCCATGTCTGTTTCATTCGGCTTGCATTTCTTGATTCTATATGTCCCATTCCTTGCCAAAATCTTCGGCATTGTCCCACTGTCCTTGAATGAATGGCTCTTGGTTCTGGCTGTGGCATTGCCCGTGATCATAATCGATGAGATCCTGAAATTCATTGGAAGGCTTACTAGTGGGTTGAGGACTTCTCGCCCGAGCAGATTATCAAAGCAGAAATCGGAGTAA 3294 43.2 MGRGGENYGKKEIFAATSSKKETYPAWAKDVRECVEKYQVNPDLGLSSEEVENKRKIYGYNELEKHEGTSIFKLILEQFNDTLVRILLAAAVVSFVLAWYDGEEGGEMEITAFVEPLVIFLILIVNAIVGIWQENNAEKALEALKEIQSEQASVIRNGKRTSIVAKDLVPGDIVELRVGDKVPADMRVLRLVSSTFRVEQGSLTGESEAVSKTAKAVPEDTDIQGKKCMVFAGTTVVNGNCICVVTQTGMSTELGQVHSQIQEASQSEDDTPLKKKLNEFGELLTAIIGVICALVWLINVKYFLTWEYVDGWPANFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVAKIVALGSRVGTLRAFDVEGTTYDPLDGKIIGWLGGQLDANLQMVAKIAAVCNDAGVERSGHHFVANGMPTEAALKHVMFDKLLYVVPWICLLIKTNFVSDAFYLNVKVLVEKMGLPEGYDSSSATVNGDVLRCCQTWNKNEQRIATLEFDRDRKSMGVITNSNSGKKSLLVKGAVENLLDRSSFIQLLDGTIVNLDSDSKRYLLDCLREMSSSALRCLGFAYKEDLPEFSDYNIGDEDHPAHQLLLDPSKYSTIESNLIFAGFVGLRDPPRKEVHQAIEDCKAAGIRVMVITGDNQNTAEAICREIGVFGQYEAINSRSLTGKEFMAMSREDQKFHLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYDNMKAFIRYMISSNIGEVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPPDADIMKKPPRKSDDSLITAWILFRYLVIGLYVGLATVGVFIIWYTHGSFLGIDLSGDGHSLVSYSQLANWGQCPSWEGFSVSPFTAGDEVFSFDSDPCEYFRSGKIKASTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAKIFGIVPLSLNEWLLVLAVALPVIIIDEILKFIGRLTSGLRTSRPSRLSKQKSE 1097
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1863562 1869609 + ClCG03G001770.2 Cla03g00170 268670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00170 1097 Gene3D - 500 669 IPR023299 GO:0000166
Cla03g00170 1097 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 4 1096 - -
Cla03g00170 1097 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 739 849 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla03g00170 1097 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 118 307 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla03g00170 1097 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 319 401 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla03g00170 1097 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Cla03g00170 1097 SUPERFAMILY Calcium ATPase, transduction domain A 149 259 IPR008250 -
Cla03g00170 1097 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Cla03g00170 1097 Gene3D - 244 410 - -
Cla03g00170 1097 Pfam E1-E2 ATPase 147 360 - -
Cla03g00170 1097 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1078 IPR023298 -
Cla03g00170 1097 PRINTS P-type cation-transporting ATPase superfamily signature 789 801 - -
Cla03g00170 1097 PRINTS P-type cation-transporting ATPase superfamily signature 765 784 - -
Cla03g00170 1097 PRINTS P-type cation-transporting ATPase superfamily signature 380 394 - -
Cla03g00170 1097 PRINTS P-type cation-transporting ATPase superfamily signature 199 213 - -
Cla03g00170 1097 PRINTS P-type cation-transporting ATPase superfamily signature 679 689 - -
Cla03g00170 1097 PRINTS P-type cation-transporting ATPase superfamily signature 657 668 - -
Cla03g00170 1097 Gene3D - 31 241 - -
Cla03g00170 1097 SFLD p-type atpase 361 817 IPR044492 -
Cla03g00170 1097 SUPERFAMILY HAD-like 378 869 IPR036412 -
Cla03g00170 1097 Pfam Cation transporting ATPase, C-terminus 850 1076 IPR006068 -
Cla03g00170 1097 Pfam haloacid dehalogenase-like hydrolase 657 779 - -
Cla03g00170 1097 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 387 661 IPR023299 GO:0000166
Cla03g00170 1097 SFLD Haloacid Dehalogenase 361 817 - -
Cla03g00170 1097 ProSitePatterns E1-E2 ATPases phosphorylation site. 382 388 IPR018303 -
Cla03g00170 1097 Pfam Cation transport ATPase (P-type) 444 580 - -
Cla03g00170 1097 Gene3D - 774 1082 - -
Cla03g00170 1097 PANTHER CALCIUM-TRANSPORTING ATPASE 4 1096 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00170 Cla-Chr3:1863562 Cla08g01633 Cla-Chr8:28898171 0 dispersed
Cla03g00170 Cla-Chr3:1863562 Cla10g01496 Cla-Chr10:30188099 1.54E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00170 K01537 - csv:101206729 2018.43