Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00195 ATGGTAAAGTGCTACCCTACTGTAAGTGAGGAATATCAGAAGGCCATTGAAAAGGCTAAGAGAAAACTCAGAGGACTCATCGCTGAGAAGAACTGTGCTCCTCTAATTCTTCGTCTTGCATGGCACTCTGCTGGAACCTTTGACCATAAAACCAAGACCGGTGGTCCTTTTGGAACTATAAGGTTCTCTAGTGAGCTCGCCCATGGCGCCAACAATGGCCTCGACATCGCTGTTAGGCTATTGGAGCCCATCAAGCAGCAGTTCCCAATCCTCTCATATGCAGACTTTTACCAGTTGGCTGGTGTTGTTGCTGTTGAGGTTACTGGAGGGCCTGAAGTTCCTTTCCACCCTGGTAGAGAGGACAAACCCGAACCCCCCCCAGAAGGTCGCTTGCCTGACGCCACTAAGGGTTCTGATCATCTGAGGGATGTTTTCTACACCATGGGTCTCTCGGACCAGGACATTGTTGCCCTCTCTGGCGGTCACACATTGGGTAGGGCACACAAAGAACGATCTGGTTTTGAGGGGCCGTGGACTTCCAACCCTCTCATCTTTGATAATTCATACTTCACTGAACTCTTGAGCGGGGAGAAGGAAGGCCTTCTGCAGTTGGCATCAGACAAGGCACTTCTGTCTGATCCCGTCTTCCGCCCCCTTGTTGAAAAATATGCTGCGGATGAGGATGCTTTCTTTGCTGACTATGCTGAAGCTCACCAGAAGCTTTCTGAGTTAGGAATCGAAGAATTTGATACAGGAGGTGTTTCAGAGCAAAGGGTTTCCAAGATTATGGCTGATGTTGCTCAGAACAACCCCGCTGATTTTCCTGCTGTTTCAACCCATGGTGGCCAATACGTTCAGTACAATATCTTTGGGAATCCCTTCGAAATAACCTCCAAATATCGTCCCCCGATTATGCCTATAGGTCGCGGAGCATACGGAATCGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTAAGAAGATTGCTAACGCGTTTGATAACCATATGGATGCGAAGAGGACGCTCCGTGAGATTAAGCTTCTTCGCCATTTGGATCATGAAAATGTTATAGGCATTAGAGATGTGATTCCTCCACCTTTACGGAGAGAATTCAATGATGTCTACATTTCGACTGAACTAATGGATACCGATCTTCACCAAATAATCCGTTCCAACCAAAGTTTATCAGAAGAGCATTGTCAGTATTTCCTTTATCAGATTCTCCGAGGACTGAAATACATACATTCTGCCAATGTCATTCATCGAGACTTGAAACCGAGCAATCTATTGCTTAATGCAAATTGTGATCTTAAAATATGTGACTTTGGGCTTGCTCGGCCAACTTCGGAAAATGAATGTATGACGGAATATGTTGTCACAAGATGGTATAGAGCACCTGAGCTTCTATTGAACTCTGATTATACAGCTTCTATTGATATCTGGTCTGTTGGTTGCATCTTTCTGGAGCTTATGAACAGAAGGCCTTTATTCCCAGGAAGGGATCATGTGCATCAGATGCGATTATTAACTGAGCTTCTCGGCACACCAACCGAGTCAGATCTTGGTTTTATTCGAAATGAAGACTCGAAAAGATATCTTCGGCAGCTACCTCCACTTCCTCGTCAGCCATTAGCAACGGTTTTTCCACATGTTCATCCATTGGCAATTGATCTTGTGGATAAAATGTTGACGTTTGACCCAAAAAGGAGAATTACTGTTGAAGAAGCGTTGGCACATCCATACCTAGAAAGATTGCATGACACAGCGGATGAGCCGGTTTGCCCAGAGCCATTCTCGTTCGAGTTTGAGCAACAATTCTTAGATGAAGAACAGATGAAGGAGATGATTTACAGAGAGGCATTAGCACTCAATCCAGAATTTGCATGA 1899 44.39 MVKCYPTVSEEYQKAIEKAKRKLRGLIAEKNCAPLILRLAWHSAGTFDHKTKTGGPFGTIRFSSELAHGANNGLDIAVRLLEPIKQQFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFYTMGLSDQDIVALSGGHTLGRAHKERSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLASDKALLSDPVFRPLVEKYAADEDAFFADYAEAHQKLSELGIEEFDTGGVSEQRVSKIMADVAQNNPADFPAVSTHGGQYVQYNIFGNPFEITSKYRPPIMPIGRGAYGIVXXXXXXXXXXXXXVKKIANAFDNHMDAKRTLREIKLLRHLDHENVIGIRDVIPPPLRREFNDVYISTELMDTDLHQIIRSNQSLSEEHCQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENECMTEYVVTRWYRAPELLLNSDYTASIDIWSVGCIFLELMNRRPLFPGRDHVHQMRLLTELLGTPTESDLGFIRNEDSKRYLRQLPPLPRQPLATVFPHVHPLAIDLVDKMLTFDPKRRITVEEALAHPYLERLHDTADEPVCPEPFSFEFEQQFLDEEQMKEMIYREALALNPEFA 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2172289 2182042 - ClCG03G002010.2 Cla03g00195 268695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00195 632 SUPERFAMILY Protein kinase-like (PK-like) 306 594 IPR011009 -
Cla03g00195 632 Gene3D Transferase(Phosphotransferase) domain 1 385 613 - -
Cla03g00195 632 ProSitePatterns Peroxidases active site signature. 33 44 IPR019794 GO:0004601
Cla03g00195 632 PRINTS Plant ascorbate peroxidase signature 12 32 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla03g00195 632 PRINTS Plant ascorbate peroxidase signature 33 48 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla03g00195 632 PRINTS Plant ascorbate peroxidase signature 65 89 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla03g00195 632 PRINTS Plant ascorbate peroxidase signature 51 61 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla03g00195 632 PRINTS Plant ascorbate peroxidase signature 109 121 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla03g00195 632 PRINTS Plant ascorbate peroxidase signature 130 147 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla03g00195 632 PRINTS Plant ascorbate peroxidase signature 170 194 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla03g00195 632 PRINTS Plant ascorbate peroxidase signature 148 169 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla03g00195 632 PRINTS Plant ascorbate peroxidase signature 196 221 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla03g00195 632 PRINTS Plant ascorbate peroxidase signature 90 108 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla03g00195 632 ProSitePatterns Peroxidases proximal heme-ligand signature. 154 164 IPR019793 -
Cla03g00195 632 MobiDBLite consensus disorder prediction 115 137 - -
Cla03g00195 632 PRINTS Haem peroxidase superfamily signature 33 47 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla03g00195 632 PRINTS Haem peroxidase superfamily signature 154 169 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla03g00195 632 PRINTS Haem peroxidase superfamily signature 91 108 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla03g00195 632 PRINTS Haem peroxidase superfamily signature 178 193 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla03g00195 632 PRINTS Haem peroxidase superfamily signature 109 121 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla03g00195 632 ProSiteProfiles Protein kinase domain profile. 301 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00195 632 Gene3D Peroxidase, domain 2 132 238 - -
Cla03g00195 632 SMART serkin_6 301 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00195 632 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 277 631 - -
Cla03g00195 632 ProSitePatterns MAP kinase signature. 336 439 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cla03g00195 632 Gene3D Phosphorylase Kinase; domain 1 284 623 - -
Cla03g00195 632 Gene3D - 19 245 - -
Cla03g00195 632 MobiDBLite consensus disorder prediction 110 137 - -
Cla03g00195 632 ProSiteProfiles Plant heme peroxidase family profile. 74 270 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla03g00195 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Cla03g00195 632 Coils Coil 9 29 - -
Cla03g00195 632 CDD ascorbate_peroxidase 5 248 - -
Cla03g00195 632 Pfam Peroxidase 22 226 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla03g00195 632 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 277 631 - -
Cla03g00195 632 SUPERFAMILY Heme-dependent peroxidases 4 246 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cla03g00195 632 Pfam Protein kinase domain 306 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01992 Cla-Chr1:34574476 Cla03g00195 Cla-Chr3:2172289 5.33E-100 dispersed
Cla02g02025 Cla-Chr2:35241248 Cla03g00195 Cla-Chr3:2172289 3.05E-147 dispersed
Cla03g00195 Cla-Chr3:2172289 Cla08g01021 Cla-Chr8:22915567 0 dispersed
Cla08g00603 Cla-Chr8:17949623 Cla03g00195 Cla-Chr3:2172289 2.73E-59 dispersed
Cla08g01335 Cla-Chr8:26209263 Cla03g00195 Cla-Chr3:2172289 1.65E-35 dispersed
Cla03g00195 Cla-Chr3:2172289 Cla03g00202 Cla-Chr3:2273884 4.66E-167 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80406 PF00069 Pkinase 3.90E-68 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00195 K20536 - csv:101202796 686.797