Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla03g00195 | ATGGTAAAGTGCTACCCTACTGTAAGTGAGGAATATCAGAAGGCCATTGAAAAGGCTAAGAGAAAACTCAGAGGACTCATCGCTGAGAAGAACTGTGCTCCTCTAATTCTTCGTCTTGCATGGCACTCTGCTGGAACCTTTGACCATAAAACCAAGACCGGTGGTCCTTTTGGAACTATAAGGTTCTCTAGTGAGCTCGCCCATGGCGCCAACAATGGCCTCGACATCGCTGTTAGGCTATTGGAGCCCATCAAGCAGCAGTTCCCAATCCTCTCATATGCAGACTTTTACCAGTTGGCTGGTGTTGTTGCTGTTGAGGTTACTGGAGGGCCTGAAGTTCCTTTCCACCCTGGTAGAGAGGACAAACCCGAACCCCCCCCAGAAGGTCGCTTGCCTGACGCCACTAAGGGTTCTGATCATCTGAGGGATGTTTTCTACACCATGGGTCTCTCGGACCAGGACATTGTTGCCCTCTCTGGCGGTCACACATTGGGTAGGGCACACAAAGAACGATCTGGTTTTGAGGGGCCGTGGACTTCCAACCCTCTCATCTTTGATAATTCATACTTCACTGAACTCTTGAGCGGGGAGAAGGAAGGCCTTCTGCAGTTGGCATCAGACAAGGCACTTCTGTCTGATCCCGTCTTCCGCCCCCTTGTTGAAAAATATGCTGCGGATGAGGATGCTTTCTTTGCTGACTATGCTGAAGCTCACCAGAAGCTTTCTGAGTTAGGAATCGAAGAATTTGATACAGGAGGTGTTTCAGAGCAAAGGGTTTCCAAGATTATGGCTGATGTTGCTCAGAACAACCCCGCTGATTTTCCTGCTGTTTCAACCCATGGTGGCCAATACGTTCAGTACAATATCTTTGGGAATCCCTTCGAAATAACCTCCAAATATCGTCCCCCGATTATGCCTATAGGTCGCGGAGCATACGGAATCGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTAAGAAGATTGCTAACGCGTTTGATAACCATATGGATGCGAAGAGGACGCTCCGTGAGATTAAGCTTCTTCGCCATTTGGATCATGAAAATGTTATAGGCATTAGAGATGTGATTCCTCCACCTTTACGGAGAGAATTCAATGATGTCTACATTTCGACTGAACTAATGGATACCGATCTTCACCAAATAATCCGTTCCAACCAAAGTTTATCAGAAGAGCATTGTCAGTATTTCCTTTATCAGATTCTCCGAGGACTGAAATACATACATTCTGCCAATGTCATTCATCGAGACTTGAAACCGAGCAATCTATTGCTTAATGCAAATTGTGATCTTAAAATATGTGACTTTGGGCTTGCTCGGCCAACTTCGGAAAATGAATGTATGACGGAATATGTTGTCACAAGATGGTATAGAGCACCTGAGCTTCTATTGAACTCTGATTATACAGCTTCTATTGATATCTGGTCTGTTGGTTGCATCTTTCTGGAGCTTATGAACAGAAGGCCTTTATTCCCAGGAAGGGATCATGTGCATCAGATGCGATTATTAACTGAGCTTCTCGGCACACCAACCGAGTCAGATCTTGGTTTTATTCGAAATGAAGACTCGAAAAGATATCTTCGGCAGCTACCTCCACTTCCTCGTCAGCCATTAGCAACGGTTTTTCCACATGTTCATCCATTGGCAATTGATCTTGTGGATAAAATGTTGACGTTTGACCCAAAAAGGAGAATTACTGTTGAAGAAGCGTTGGCACATCCATACCTAGAAAGATTGCATGACACAGCGGATGAGCCGGTTTGCCCAGAGCCATTCTCGTTCGAGTTTGAGCAACAATTCTTAGATGAAGAACAGATGAAGGAGATGATTTACAGAGAGGCATTAGCACTCAATCCAGAATTTGCATGA | 1899 | 44.39 | MVKCYPTVSEEYQKAIEKAKRKLRGLIAEKNCAPLILRLAWHSAGTFDHKTKTGGPFGTIRFSSELAHGANNGLDIAVRLLEPIKQQFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFYTMGLSDQDIVALSGGHTLGRAHKERSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLASDKALLSDPVFRPLVEKYAADEDAFFADYAEAHQKLSELGIEEFDTGGVSEQRVSKIMADVAQNNPADFPAVSTHGGQYVQYNIFGNPFEITSKYRPPIMPIGRGAYGIVXXXXXXXXXXXXXVKKIANAFDNHMDAKRTLREIKLLRHLDHENVIGIRDVIPPPLRREFNDVYISTELMDTDLHQIIRSNQSLSEEHCQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENECMTEYVVTRWYRAPELLLNSDYTASIDIWSVGCIFLELMNRRPLFPGRDHVHQMRLLTELLGTPTESDLGFIRNEDSKRYLRQLPPLPRQPLATVFPHVHPLAIDLVDKMLTFDPKRRITVEEALAHPYLERLHDTADEPVCPEPFSFEFEQQFLDEEQMKEMIYREALALNPEFA | 632 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2172289 | 2182042 | - | ClCG03G002010.2 | Cla03g00195 | 268695 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla03g00195 | 632 | SUPERFAMILY | Protein kinase-like (PK-like) | 306 | 594 | IPR011009 | - | |
Cla03g00195 | 632 | Gene3D | Transferase(Phosphotransferase) domain 1 | 385 | 613 | - | - | |
Cla03g00195 | 632 | ProSitePatterns | Peroxidases active site signature. | 33 | 44 | IPR019794 | GO:0004601 | |
Cla03g00195 | 632 | PRINTS | Plant ascorbate peroxidase signature | 12 | 32 | IPR002207 | GO:0004601|GO:0006979|GO:0020037 | |
Cla03g00195 | 632 | PRINTS | Plant ascorbate peroxidase signature | 33 | 48 | IPR002207 | GO:0004601|GO:0006979|GO:0020037 | |
Cla03g00195 | 632 | PRINTS | Plant ascorbate peroxidase signature | 65 | 89 | IPR002207 | GO:0004601|GO:0006979|GO:0020037 | |
Cla03g00195 | 632 | PRINTS | Plant ascorbate peroxidase signature | 51 | 61 | IPR002207 | GO:0004601|GO:0006979|GO:0020037 | |
Cla03g00195 | 632 | PRINTS | Plant ascorbate peroxidase signature | 109 | 121 | IPR002207 | GO:0004601|GO:0006979|GO:0020037 | |
Cla03g00195 | 632 | PRINTS | Plant ascorbate peroxidase signature | 130 | 147 | IPR002207 | GO:0004601|GO:0006979|GO:0020037 | |
Cla03g00195 | 632 | PRINTS | Plant ascorbate peroxidase signature | 170 | 194 | IPR002207 | GO:0004601|GO:0006979|GO:0020037 | |
Cla03g00195 | 632 | PRINTS | Plant ascorbate peroxidase signature | 148 | 169 | IPR002207 | GO:0004601|GO:0006979|GO:0020037 | |
Cla03g00195 | 632 | PRINTS | Plant ascorbate peroxidase signature | 196 | 221 | IPR002207 | GO:0004601|GO:0006979|GO:0020037 | |
Cla03g00195 | 632 | PRINTS | Plant ascorbate peroxidase signature | 90 | 108 | IPR002207 | GO:0004601|GO:0006979|GO:0020037 | |
Cla03g00195 | 632 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 154 | 164 | IPR019793 | - | |
Cla03g00195 | 632 | MobiDBLite | consensus disorder prediction | 115 | 137 | - | - | |
Cla03g00195 | 632 | PRINTS | Haem peroxidase superfamily signature | 33 | 47 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cla03g00195 | 632 | PRINTS | Haem peroxidase superfamily signature | 154 | 169 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cla03g00195 | 632 | PRINTS | Haem peroxidase superfamily signature | 91 | 108 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cla03g00195 | 632 | PRINTS | Haem peroxidase superfamily signature | 178 | 193 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cla03g00195 | 632 | PRINTS | Haem peroxidase superfamily signature | 109 | 121 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cla03g00195 | 632 | ProSiteProfiles | Protein kinase domain profile. | 301 | 586 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla03g00195 | 632 | Gene3D | Peroxidase, domain 2 | 132 | 238 | - | - | |
Cla03g00195 | 632 | SMART | serkin_6 | 301 | 586 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla03g00195 | 632 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 277 | 631 | - | - | |
Cla03g00195 | 632 | ProSitePatterns | MAP kinase signature. | 336 | 439 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Cla03g00195 | 632 | Gene3D | Phosphorylase Kinase; domain 1 | 284 | 623 | - | - | |
Cla03g00195 | 632 | Gene3D | - | 19 | 245 | - | - | |
Cla03g00195 | 632 | MobiDBLite | consensus disorder prediction | 110 | 137 | - | - | |
Cla03g00195 | 632 | ProSiteProfiles | Plant heme peroxidase family profile. | 74 | 270 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cla03g00195 | 632 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 423 | 435 | IPR008271 | GO:0004672|GO:0006468 | |
Cla03g00195 | 632 | Coils | Coil | 9 | 29 | - | - | |
Cla03g00195 | 632 | CDD | ascorbate_peroxidase | 5 | 248 | - | - | |
Cla03g00195 | 632 | Pfam | Peroxidase | 22 | 226 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cla03g00195 | 632 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 277 | 631 | - | - | |
Cla03g00195 | 632 | SUPERFAMILY | Heme-dependent peroxidases | 4 | 246 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
Cla03g00195 | 632 | Pfam | Protein kinase domain | 306 | 586 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01992 | Cla-Chr1:34574476 | Cla03g00195 | Cla-Chr3:2172289 | 5.33E-100 | dispersed | |
Cla02g02025 | Cla-Chr2:35241248 | Cla03g00195 | Cla-Chr3:2172289 | 3.05E-147 | dispersed | |
Cla03g00195 | Cla-Chr3:2172289 | Cla08g01021 | Cla-Chr8:22915567 | 0 | dispersed | |
Cla08g00603 | Cla-Chr8:17949623 | Cla03g00195 | Cla-Chr3:2172289 | 2.73E-59 | dispersed | |
Cla08g01335 | Cla-Chr8:26209263 | Cla03g00195 | Cla-Chr3:2172289 | 1.65E-35 | dispersed | |
Cla03g00195 | Cla-Chr3:2172289 | Cla03g00202 | Cla-Chr3:2273884 | 4.66E-167 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80406 | PF00069 | Pkinase | 3.90E-68 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla03g00195 | K20536 | - | csv:101202796 | 686.797 |