Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla03g00219 | ATGATGTCTGAATTTGATGGCCTTTCTGGTCTGTCCACAATCAGCAATCTGATTGGTCAACACAATCGTAATTCCAACCCTAATTCACTTGTTGTTCCTCTTAAGAAGAAGAGAAATTTACCAGGAACACCAGATCCAGATGCGGAAGTAATAGCGATGTCTCCGAAGTCTCTAATGGCGAAGAATAGATTCATTTGCGAGATATGCAACAAGGGATTTCAAAGAGACCAAAACTTGCAGCTTCACCGACGAGGGCACAACTTGCCGTGGAAGCTCCGACAAAGGACGAGCAAGGAAGTGAGGAAGAAGGTGTATGTTTGCCCGGAGAAGAGCTGCGTGCACCACGACCCGGCGAGGGCGCTCGGCGACCTCACCGGGATCAAGAAGCACTATAGTAGGAAGCATGGTGAGAAGAAGTGGAAGTGTGAGAAATGCTCCAAGAAGTATGCAGTTCAATCAGATTGGAAGGCTCATTCAAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTTTCCAGAAAGGATAGCTTCATTACTCACAGAGCATTTTGTGATGCATTAACTGAAGAAAACTCAAGAATAAATCATCATCATCATCATCATCATCATCCAACCTTCATAAACAACTTTTCTCCTACTTCTTCTTCACTACTTCTCCAACCAAACTTCGTCACCGCCACTGTCGCTGCCGATCAAACCTCCCTTGCCCACAATTTTCCTAACATTATCTCCGACCACGACGGCGACCACAAGCCCCATCCTCTTCCGCTGTCGTCGCCACCGCAGCTCCCGCTCTGGCTCGACCCTCCTCCCAATACTCCTAACCCCTTTTTCTCTTCGGCCACTGCCATCCACGGCTTCTCCGACCACCCTACATTCTTCTCGGAAAATCACCACCTTTTTTTGTCGGAGCCGCTAACGACGGCCTCCTCGTACGCAGCGGCGCCCCACATGTCCGCCACCGCACTCCTCCAAAATGCCGCCCAAATGGGGCCCACCAGAACCCCAGCCGGGCCGCCGATTCTCTTCAATGCCTCCACCACCGGGGCGGCATATGGAACGAACAACTCAGCCGCTGCTGCCGCGGTCTTATCGGATGGCCGTCCGATGAAGCCATTAATGGGGGGAGCTAAGGATGAAATTGGAGGGCAGAATTTTACCAGAGACTTTCTCGGCGTAGGAAATCAGGTGGTGCATCTCACTCCGGTGGGTTCCAATCAATACAGTGATCAGAGCCGCGGCCATTAG | 1260 | 50.71 | MMSEFDGLSGLSTISNLIGQHNRNSNPNSLVVPLKKKRNLPGTPDPDAEVIAMSPKSLMAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYVCPEKSCVHHDPARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALTEENSRINHHHHHHHHPTFINNFSPTSSSLLLQPNFVTATVAADQTSLAHNFPNIISDHDGDHKPHPLPLSSPPQLPLWLDPPPNTPNPFFSSATAIHGFSDHPTFFSENHHLFLSEPLTTASSYAAAPHMSATALLQNAAQMGPTRTPAGPPILFNASTTGAAYGTNNSAAAAAVLSDGRPMKPLMGGAKDEIGGQNFTRDFLGVGNQVVHLTPVGSNQYSDQSRGH | 419 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2550923 | 2553508 | - | ClCG03G002260.2 | Cla03g00219 | 268719 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla03g00219 | 419 | Pfam | Zinc-finger double-stranded RNA-binding | 64 | 86 | IPR022755 | - | |
Cla03g00219 | 419 | SUPERFAMILY | beta-beta-alpha zinc fingers | 63 | 160 | IPR036236 | - | |
Cla03g00219 | 419 | Gene3D | Classic Zinc Finger | 97 | 189 | - | - | |
Cla03g00219 | 419 | Gene3D | Classic Zinc Finger | 60 | 87 | - | - | |
Cla03g00219 | 419 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 64 | 86 | IPR013087 | - | |
Cla03g00219 | 419 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 13-RELATED | 14 | 401 | - | - | |
Cla03g00219 | 419 | SMART | c2h2final6 | 105 | 135 | IPR013087 | - | |
Cla03g00219 | 419 | SMART | c2h2final6 | 140 | 160 | IPR013087 | - | |
Cla03g00219 | 419 | SMART | c2h2final6 | 64 | 86 | IPR013087 | - | |
Cla03g00219 | 419 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 66 | 86 | IPR013087 | - | |
Cla03g00219 | 419 | MobiDBLite | consensus disorder prediction | 19 | 46 | - | - | |
Cla03g00219 | 419 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 14 | 401 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla03g00219 | Cla-Chr3:2550923 | Cla04g00874 | Cla-Chr4:23762728 | 3.35E-111 | dispersed | |
Cla03g00219 | Cla-Chr3:2550923 | Cla10g01937 | Cla-Chr10:35207330 | 5.93E-112 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60772 | PF12171 | zf-C2H2_jaz | 5.90E-05 | CL0361 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla03g00219 | K25870 | - | csv:101212420 | 604.364 |