Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00219 ATGATGTCTGAATTTGATGGCCTTTCTGGTCTGTCCACAATCAGCAATCTGATTGGTCAACACAATCGTAATTCCAACCCTAATTCACTTGTTGTTCCTCTTAAGAAGAAGAGAAATTTACCAGGAACACCAGATCCAGATGCGGAAGTAATAGCGATGTCTCCGAAGTCTCTAATGGCGAAGAATAGATTCATTTGCGAGATATGCAACAAGGGATTTCAAAGAGACCAAAACTTGCAGCTTCACCGACGAGGGCACAACTTGCCGTGGAAGCTCCGACAAAGGACGAGCAAGGAAGTGAGGAAGAAGGTGTATGTTTGCCCGGAGAAGAGCTGCGTGCACCACGACCCGGCGAGGGCGCTCGGCGACCTCACCGGGATCAAGAAGCACTATAGTAGGAAGCATGGTGAGAAGAAGTGGAAGTGTGAGAAATGCTCCAAGAAGTATGCAGTTCAATCAGATTGGAAGGCTCATTCAAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTTTCCAGAAAGGATAGCTTCATTACTCACAGAGCATTTTGTGATGCATTAACTGAAGAAAACTCAAGAATAAATCATCATCATCATCATCATCATCATCCAACCTTCATAAACAACTTTTCTCCTACTTCTTCTTCACTACTTCTCCAACCAAACTTCGTCACCGCCACTGTCGCTGCCGATCAAACCTCCCTTGCCCACAATTTTCCTAACATTATCTCCGACCACGACGGCGACCACAAGCCCCATCCTCTTCCGCTGTCGTCGCCACCGCAGCTCCCGCTCTGGCTCGACCCTCCTCCCAATACTCCTAACCCCTTTTTCTCTTCGGCCACTGCCATCCACGGCTTCTCCGACCACCCTACATTCTTCTCGGAAAATCACCACCTTTTTTTGTCGGAGCCGCTAACGACGGCCTCCTCGTACGCAGCGGCGCCCCACATGTCCGCCACCGCACTCCTCCAAAATGCCGCCCAAATGGGGCCCACCAGAACCCCAGCCGGGCCGCCGATTCTCTTCAATGCCTCCACCACCGGGGCGGCATATGGAACGAACAACTCAGCCGCTGCTGCCGCGGTCTTATCGGATGGCCGTCCGATGAAGCCATTAATGGGGGGAGCTAAGGATGAAATTGGAGGGCAGAATTTTACCAGAGACTTTCTCGGCGTAGGAAATCAGGTGGTGCATCTCACTCCGGTGGGTTCCAATCAATACAGTGATCAGAGCCGCGGCCATTAG 1260 50.71 MMSEFDGLSGLSTISNLIGQHNRNSNPNSLVVPLKKKRNLPGTPDPDAEVIAMSPKSLMAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYVCPEKSCVHHDPARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALTEENSRINHHHHHHHHPTFINNFSPTSSSLLLQPNFVTATVAADQTSLAHNFPNIISDHDGDHKPHPLPLSSPPQLPLWLDPPPNTPNPFFSSATAIHGFSDHPTFFSENHHLFLSEPLTTASSYAAAPHMSATALLQNAAQMGPTRTPAGPPILFNASTTGAAYGTNNSAAAAAVLSDGRPMKPLMGGAKDEIGGQNFTRDFLGVGNQVVHLTPVGSNQYSDQSRGH 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2550923 2553508 - ClCG03G002260.2 Cla03g00219 268719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00219 419 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
Cla03g00219 419 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Cla03g00219 419 Gene3D Classic Zinc Finger 97 189 - -
Cla03g00219 419 Gene3D Classic Zinc Finger 60 87 - -
Cla03g00219 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Cla03g00219 419 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 14 401 - -
Cla03g00219 419 SMART c2h2final6 105 135 IPR013087 -
Cla03g00219 419 SMART c2h2final6 140 160 IPR013087 -
Cla03g00219 419 SMART c2h2final6 64 86 IPR013087 -
Cla03g00219 419 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Cla03g00219 419 MobiDBLite consensus disorder prediction 19 46 - -
Cla03g00219 419 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 401 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00219 Cla-Chr3:2550923 Cla04g00874 Cla-Chr4:23762728 3.35E-111 dispersed
Cla03g00219 Cla-Chr3:2550923 Cla10g01937 Cla-Chr10:35207330 5.93E-112 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60772 PF12171 zf-C2H2_jaz 5.90E-05 CL0361 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00219 K25870 - csv:101212420 604.364