Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00228 ATGGTCCACAAAGTGTTAGTGATTAGAATCATGAAAGAAATTGCTTCAATTTTGAGCTACAACAATCCCGTCTCCCCGCCACTCTCTCCGGCTAAAATGGAGAAAAATGAGGCACATACGGTGGCGGTGGGTAGTCCGTGTGCGGCTTGTAAAATTCTCCGGCGAAGATGCCGAGAGAATTGCGAATTGGGGCCGTATTTTCCTCCAACGGAACCTCTCAAATTCACTATTGCTCATAGGGTCTTCGGTGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTAAGTCGCAAAGAGCAGATGCTGTGAACAGTATGGTATATGAGGCAAGTGCAAGAATAAGAGATCCAATTTATGGATGTGCTGGCTCAATTTTCCAACTCCAAAAACAAATAAATGACCTACAAGGAGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAAAATGCAATGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGGCTCAAATGCCACAACCACCAATGTATGATCATCAACCACTTAATCAAAATTACAACATTTCTAGCCCTCAAAGTTATCAAACCTATTCATACTTATTTGAGGAGGGTAATATTTTGGAGCCTCTTTGGACTTGA 627 42.11 MVHKVLVIRIMKEIASILSYNNPVSPPLSPAKMEKNEAHTVAVGSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQCQQANLMTLICKELAQMPQPPMYDHQPLNQNYNISSPQSYQTYSYLFEEGNILEPLWT 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2736726 2745650 - ClCG03G002360.2 Cla03g00228 268728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00228 208 Pfam Lateral organ boundaries (LOB) domain 46 143 IPR004883 -
Cla03g00228 208 Coils Coil 125 152 - -
Cla03g00228 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 33 207 - -
Cla03g00228 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 33 207 - -
Cla03g00228 208 ProSiteProfiles LOB domain profile. 45 146 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g01367 Cla03g00228 CCT
Cla02g01367 Cla03g00228 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00228 Cla-Chr3:2736726 Cla07g00427 Cla-Chr7:5704730 8.27E-47 dispersed
Cla03g00228 Cla-Chr3:2736726 Cla03g00230 Cla-Chr3:2765872 9.75E-92 proximal
Cla02g02039 Cla-Chr2:35442150 Cla03g00228 Cla-Chr3:2736726 9.03E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60773 PF03195 LOB 9.60E-39 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00228 - - csv:101222021 301.597