Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla03g00228 | ATGGTCCACAAAGTGTTAGTGATTAGAATCATGAAAGAAATTGCTTCAATTTTGAGCTACAACAATCCCGTCTCCCCGCCACTCTCTCCGGCTAAAATGGAGAAAAATGAGGCACATACGGTGGCGGTGGGTAGTCCGTGTGCGGCTTGTAAAATTCTCCGGCGAAGATGCCGAGAGAATTGCGAATTGGGGCCGTATTTTCCTCCAACGGAACCTCTCAAATTCACTATTGCTCATAGGGTCTTCGGTGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTAAGTCGCAAAGAGCAGATGCTGTGAACAGTATGGTATATGAGGCAAGTGCAAGAATAAGAGATCCAATTTATGGATGTGCTGGCTCAATTTTCCAACTCCAAAAACAAATAAATGACCTACAAGGAGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAAAATGCAATGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGGCTCAAATGCCACAACCACCAATGTATGATCATCAACCACTTAATCAAAATTACAACATTTCTAGCCCTCAAAGTTATCAAACCTATTCATACTTATTTGAGGAGGGTAATATTTTGGAGCCTCTTTGGACTTGA | 627 | 42.11 | MVHKVLVIRIMKEIASILSYNNPVSPPLSPAKMEKNEAHTVAVGSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQCQQANLMTLICKELAQMPQPPMYDHQPLNQNYNISSPQSYQTYSYLFEEGNILEPLWT | 208 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2736726 | 2745650 | - | ClCG03G002360.2 | Cla03g00228 | 268728 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla03g00228 | 208 | Pfam | Lateral organ boundaries (LOB) domain | 46 | 143 | IPR004883 | - | |
Cla03g00228 | 208 | Coils | Coil | 125 | 152 | - | - | |
Cla03g00228 | 208 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 1 | 33 | 207 | - | - | |
Cla03g00228 | 208 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 33 | 207 | - | - | |
Cla03g00228 | 208 | ProSiteProfiles | LOB domain profile. | 45 | 146 | IPR004883 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla02g01367 | Cla03g00228 | CCT | |
Cla02g01367 | Cla03g00228 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla03g00228 | Cla-Chr3:2736726 | Cla07g00427 | Cla-Chr7:5704730 | 8.27E-47 | dispersed | |
Cla03g00228 | Cla-Chr3:2736726 | Cla03g00230 | Cla-Chr3:2765872 | 9.75E-92 | proximal | |
Cla02g02039 | Cla-Chr2:35442150 | Cla03g00228 | Cla-Chr3:2736726 | 9.03E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60773 | PF03195 | LOB | 9.60E-39 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla03g00228 | - | - | csv:101222021 | 301.597 |