Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla03g00230 | ATGGAGTCCAGTGAGCCAAAATCCAGCCCAACTTCAACTAACCTCCTTTCTCAGTCGTCGCCGTCGTCTCCTTCACCACCGCCGAGTGTTCAGGCCGCCGTGGTGGTCAGTCCGTGTGCGGCGTGCAAGATTCTGAGGCGGAGATGCGCAGAGAAATGCGTATTAGCGCCCTATTTTCCTCCCTCTGATCCTCTCAAATTCACCATTGCTCACCGTGTCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTGATTCACAAAGGGCTGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGCCAGCTTCAGAAACAGATAAACGAATTGCAAGCAGAACTAGCCAAGACACAGGCTGAGCTTGTCAATATCCACTGCCACCAAGCCAATTTGGTGGCTCTGATTTGCAAGGAGTTAGCCCAAACGCCGCCACCGATGTCGCCACTGCCGGACCACCGCTCACTTGACAACAATTTCAACATTGCCACACCTCAGAGCTACCAAGGCTACACATCTTTGTTTGAGGATAGCAATATTTGGGACCCTCTTTGGACATGA | 609 | 50.41 | MESSEPKSSPTSTNLLSQSSPSSPSPPPSVQAAVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPMSPLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT | 202 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 2765872 | 2766917 | + | ClCG03G002370.1 | Cla03g00230 | 268730 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla03g00230 | 202 | Coils | Coil | 117 | 144 | - | - | |
| Cla03g00230 | 202 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cla03g00230 | 202 | Pfam | Lateral organ boundaries (LOB) domain | 38 | 135 | IPR004883 | - | |
| Cla03g00230 | 202 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 1 | 24 | 201 | - | - | |
| Cla03g00230 | 202 | ProSiteProfiles | LOB domain profile. | 37 | 138 | IPR004883 | - | |
| Cla03g00230 | 202 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Cla03g00230 | 202 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 24 | 201 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g01367 | Cla-Chr2:28053777 | Cla03g00230 | Cla-Chr3:2765872 | 1.70E-74 | dispersed | |
| Cla02g02039 | Cla-Chr2:35442150 | Cla03g00230 | Cla-Chr3:2765872 | 5.61E-82 | dispersed | |
| Cla03g00230 | Cla-Chr3:2765872 | Cla07g00427 | Cla-Chr7:5704730 | 2.48E-49 | dispersed | |
| Cla06g01470 | Cla-Chr6:28260719 | Cla03g00230 | Cla-Chr3:2765872 | 2.57E-08 | dispersed | |
| Cla03g00228 | Cla-Chr3:2736726 | Cla03g00230 | Cla-Chr3:2765872 | 9.75E-92 | proximal |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 60774 | PF03195 | LOB | 4.50E-41 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla03g00230 | - | - | csv:101222262 | 325.865 |