Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00230 ATGGAGTCCAGTGAGCCAAAATCCAGCCCAACTTCAACTAACCTCCTTTCTCAGTCGTCGCCGTCGTCTCCTTCACCACCGCCGAGTGTTCAGGCCGCCGTGGTGGTCAGTCCGTGTGCGGCGTGCAAGATTCTGAGGCGGAGATGCGCAGAGAAATGCGTATTAGCGCCCTATTTTCCTCCCTCTGATCCTCTCAAATTCACCATTGCTCACCGTGTCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTGATTCACAAAGGGCTGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGCCAGCTTCAGAAACAGATAAACGAATTGCAAGCAGAACTAGCCAAGACACAGGCTGAGCTTGTCAATATCCACTGCCACCAAGCCAATTTGGTGGCTCTGATTTGCAAGGAGTTAGCCCAAACGCCGCCACCGATGTCGCCACTGCCGGACCACCGCTCACTTGACAACAATTTCAACATTGCCACACCTCAGAGCTACCAAGGCTACACATCTTTGTTTGAGGATAGCAATATTTGGGACCCTCTTTGGACATGA 609 50.41 MESSEPKSSPTSTNLLSQSSPSSPSPPPSVQAAVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPMSPLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT 202
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 2765872 2766917 + ClCG03G002370.1 Cla03g00230 268730
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00230 202 Coils Coil 117 144 - -
Cla03g00230 202 MobiDBLite consensus disorder prediction 1 20 - -
Cla03g00230 202 Pfam Lateral organ boundaries (LOB) domain 38 135 IPR004883 -
Cla03g00230 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 24 201 - -
Cla03g00230 202 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
Cla03g00230 202 MobiDBLite consensus disorder prediction 1 29 - -
Cla03g00230 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 201 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01367 Cla-Chr2:28053777 Cla03g00230 Cla-Chr3:2765872 1.70E-74 dispersed
Cla02g02039 Cla-Chr2:35442150 Cla03g00230 Cla-Chr3:2765872 5.61E-82 dispersed
Cla03g00230 Cla-Chr3:2765872 Cla07g00427 Cla-Chr7:5704730 2.48E-49 dispersed
Cla06g01470 Cla-Chr6:28260719 Cla03g00230 Cla-Chr3:2765872 2.57E-08 dispersed
Cla03g00228 Cla-Chr3:2736726 Cla03g00230 Cla-Chr3:2765872 9.75E-92 proximal
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60774 PF03195 LOB 4.50E-41 No_clan Cla TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00230 - - csv:101222262 325.865