Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00246 ATGGATTCAGAAGTATGGGCATTTACAAAACAAGTTTTAGCAGGACGATGGTTTTCGGTATTCGCCGGCTTAATAATGATGCTTGGCAATGGCTCCACTTACATCTATGGAACATATTCAAAAGTCATCAAGACCCGATTTGATTATAGCCAAACCCAAATTAACATATTAGGATTTGCTAAAGATCTCGGCTCCAATGTCGGTATTTTCGCGGGTCTTCTAGCCGAGGTGGCTCCGCCGTGGGTTCTCTTCGTACTCGGTGCTGCCCAGAACTTCGCTGGGTTCTTCTTGATATGGCTGGCCATCACACACCGTATCCCTCAACCAAAATTCTGGCAAATGTTCCTTTTCGTTTGCTTTGGTACTAATTCTTCAAATTTTGGAAATACAGCCATTATGGTGGCTAGTGTAAGAAACTTCCCTGACCGTCGTGGTATCATTTTGGGGTTGCTGAAAGGGTTTGTTGGTATTGGTGGTGCTGTTTATACCCAAATATATTTAGGTCTTTACGGCCATGAAGATCCAGCTAATCTTGTTCTTCTTTTTGCTTGGCTTCCCTCTACAGTAATCCTAATTCTTTTCCCATCAATTCGATCAATCCGTATCCGTAAACATCCTGAAGAACTCAAAGTGTTTTACCATTTACTTTACGTCTCTATCGTTATAGCTCTGTTCATCCTGTTTTTAACCCTTGCACAGAAAGAAGTTGTTTTCTCTCAAGCTGGGTATGGGAGTGGAGCAACCGTGGTAGTTGCGTTACTATTCCTACCCCTTTTAATCACATGTAGAGAAGAATTCTTATTGTACAGACTCAACAAACGAAACGATGACGCTTCGGTTACTCTATCCGTCAATGAGCAAAAGCCTCCCACCGTAATCACAACAGAGAAAACAGAGATTTCGGGGTCGTGTTTGTCAAGAGTATGGAATAAACCTGAAAGAGGGGAAGATTTCACCATCTTGCAAGCTATCTTCAGTATAGATATGGCTCTTATTTATCTAGCTACTTTTTCTGGTTCTGGTTCTTCTCTTGCAGCCATTGATAATTTGGGCCAGATTGGTGAATCACTTGGCTACCCACCACGAGCGATAAGCATCTTCGTTTCTTGGGTTTCCGTATTCAATTTCTTCGGCCGAGTCTTCTCCGGTTTCATCTCGGAAACTATGATGACTAAATACAAATTACCTCGTCCTCTATTATTTTCTTTTGCCTTTCTCATCACTTGCATTGGCCAGCTTATCATCGCGTATCCCACTCGGGGTTCGGTCTACCTTGCTTCCATGATTATCGGGTTCGGGTTCGGAACTCAAGTGCCATTGCTATTCTCCATAATCTCTGAGATTTTTGGGCTAAAACATTACTCCACATTGTTCAATTTTGGGCAATTGGTAGTCCCAATTGGGTCTTATTTACTAAACGTGGATGTTGTAGGCAGGTTGTACGATAAGGAAGCATTACATGAAGGTAGAAAGATGACGGGCAAGGGGATAACTTGCACCGGAGCTCATTGCTTTAGTGGATCTTTCACTACTTTGGCTGCAGCGACATTGTTTGCAGCTTTGATTATGCTTGTGTTGGCTTATAGGACTCGAGAATTCTACAATGGAGATGTATACAAGAAATACAGAGAGGATATGTGGATTTCGCAAACCGAAATAGAGTTCTATCGCGTAGACAAAAAGACACTTGACGACTAA 1698 42.23 MDSEVWAFTKQVLAGRWFSVFAGLIMMLGNGSTYIYGTYSKVIKTRFDYSQTQINILGFAKDLGSNVGIFAGLLAEVAPPWVLFVLGAAQNFAGFFLIWLAITHRIPQPKFWQMFLFVCFGTNSSNFGNTAIMVASVRNFPDRRGIILGLLKGFVGIGGAVYTQIYLGLYGHEDPANLVLLFAWLPSTVILILFPSIRSIRIRKHPEELKVFYHLLYVSIVIALFILFLTLAQKEVVFSQAGYGSGATVVVALLFLPLLITCREEFLLYRLNKRNDDASVTLSVNEQKPPTVITTEKTEISGSCLSRVWNKPERGEDFTILQAIFSIDMALIYLATFSGSGSSLAAIDNLGQIGESLGYPPRAISIFVSWVSVFNFFGRVFSGFISETMMTKYKLPRPLLFSFAFLITCIGQLIIAYPTRGSVYLASMIIGFGFGTQVPLLFSIISEIFGLKHYSTLFNFGQLVVPIGSYLLNVDVVGRLYDKEALHEGRKMTGKGITCTGAHCFSGSFTTLAAATLFAALIMLVLAYRTREFYNGDVYKKYREDMWISQTEIEFYRVDKKTLDD 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2908797 2910494 + ClCG03G002530.1 Cla03g00246 268746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00246 565 Gene3D MFS general substrate transporter like domains 14 282 IPR036259 -
Cla03g00246 565 Gene3D MFS general substrate transporter like domains 316 535 IPR036259 -
Cla03g00246 565 SUPERFAMILY MFS general substrate transporter 16 532 IPR036259 -
Cla03g00246 565 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 3 546 - -
Cla03g00246 565 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 3 546 - -
Cla03g00246 565 Pfam Nodulin-like 16 261 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00246 Cla-Chr3:2908797 Cla03g00248 Cla-Chr3:2926500 0 dispersed
Cla03g00246 Cla-Chr3:2908797 Cla03g00247 Cla-Chr3:2913026 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00246 - - bhj:120083912 973.385