Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla03g00247 | ATGAAAGACATGTTAATGTCTAGGCTTATCACCATAGTAAATTCATCACCTCAAGTAACCATGGCCGACAACTTTCTCCCCGAAACCTGCCGTTTCCTCAAACAACTTGGAGAAGGACGATGGTTTTCAGTATTCGCTTCTTTTCTAATCATGATCGGCGCAGGTTCAACTTACGTTTTCGGAACATACTCCAAAGTATTGAAAACCCAATTCGATTATGATCAAACCCAAATCAACACATTGGGATTTGCCAAAGATCTCGGCTCCAACCTCGGTGTTTTCGCCGGCCTTCTCGGCGAGGTGGCGCCGCCGTGGGTTCTGTTCATCGTCGGTTCATCTCTCAATTTCTACAGCTACTTCATGATTTGGCTCTCCATCACTCGCCGTATCGCCAAACCCAGTTTATGGAAAATGTTCTTCTACATTTCCTTAGCTGCCAATTCACAAAATTTCGCTAATACAGCCGTTTTAGTAACCAGCGTCAGGAATTTCCCTGATCGACGGGGAATTATTCTCGGACTTCTCAAAGGCTTTGTCGGAATCGGAGGTGCCATTTTAACTCAATTCTATTTAGCCATTTACGGCCATGAAAATCCAGCTAGTTTGGTTCTTCTTCTTTCATGGTTGCCCACTTTTGTGTCTTTGGTATTTTGTCTCGTGATTCGAACAATCAATATCCGTAAACATCCTGAAGAACTCAGAGTTCTTTACCATTTGCTTTATGTCTCAGTAATTCTTGCTCTGTTTCTCTTATTTCTAACCATTACCCAAAAACAAGCTGAGTTTTCTTCAGCTGGGTATATAAGTGGAGCTGCCGTCATTGTTGGATTACTATCTATTCCTCTTTTAATCGCCATTAGAGAAGAACTCATTCTCTTCAAACTCAACAAACAAACCAACAAAATTCAACCCACCCCTGTTTTCGTTCCTGAACAAAAACCTTCATCAAATCCCCCACCTACCAACAATGATTCCTTAACCCCACTTGAGGAAATTTCAGAAACTGATTCTCCATCATGTTTCTCAAACATACTCAACAAACCAGAAAGAGGATCAGATTACACCATTTTACAAGCTCTGTTCAGCAAAGACATGGCGCTTGTTTTCGTAGGAACACTTTGTGGGTGTGGTTCATCACTTGCTGCCATTGACAACATAGGCCAAATTGGTGAATCACTTGGCTATCCATCTCAATCCATAAGCATCTTCGTTTCATGGGTTTCTATATTCAATTTCTTCGGCAGAGTGGGGTCTGGCTTCATCTCTGAAACTCTCATGACAAAATACAAATTACCTCGTCCTTTAATGTTCGCTTTCTCCCATCTTCTAACCTGCATTGGCATGCTCTTCATTGCCTTCCCATATTCCGGCTCAATCTACATAGCTTCATTGATCATCGGGTTCGGATTCGGAGCTCAAGTTCCGATGGTTTTCGCCATAATTTCGGAACTTTTCGGTCTGAAATATTACGCAACCATCTTCAATTGTGCACAATTGGCAGTCCCCATTGGATCCTATGTACTAAATGTGGATGTAATTGGGAGATTATATGATATTGAAGCCATAAAAGATGGGGGAATTAAGAATGGGAAAGGACTAACTTGCCATGGAATTCATTGTTTTAGTGGGTCATTCTTGATTTTGGCTGTGGTGGTGTTGATTGGAGCTTTGGCTTCGCTTGTGTTGGCTTTCAGGACGAGAGATTTTTACAGAGGGGATGTTTATAAGAAGTATAAAGAGGATATGTGGATTCCTCAATCGGATATGGAATTTTATTGTTTAGATAACAAGAAGAAAGTTGATAACAATTTGCAGCGGACTGTCATGCCGCCTAAATATACCATGGGATCAGAAGCCTGGGCTTTCACCAAACAAGTCATAGAAGGACGATGGTTTTCAGTATTCGCCGGAATGATGATGATGATCGGCAATGGTTCAACATACATTTATGGAACATACTCCAAAGTCGTCAAGGCCGAATTTAATTACAGCCAAACCCAAATTAACACATTAGGATTCGCCAAAGATCTCGGTTCCAACGCCGGAATTTTCGCCGGCCTTCTCTCCGAGGTGGTTCCCACGTGGGTTCTCTTCATGATTGGTGCTGCCCAAAACTTCACTGGCTACTTCTTCATATGGCTGGCCATCACACGTCGTATCCCTCAACCAAAATTCTGGCAGATGTTCCTTTTCGTTTGTTTTGGAACTAATTCTTCTAATTTTTCCAATACAGGAATTATGGTCCATAGCGTCAGAAACTTCCCTGACCGTCGTGGTATCATTTTAGGGTTGCTTAAAGGGTATGTTGGTATTGGAGGTGCTATTTTAACCCAAGTTTATTTAGGAATTTATGGCCCTGAAGACCCATCAAATCTTGTTCTTCTTTTTGCTTGGTTTCCCACTACAGTAATTCTCCTTCTTTTCACCTCCATTCGACCAATTCGTATTCGTAAACATCCCGAAGAACTCAAAGTTTTTTACCATTTACTTTACGTCTCTGTTGTTCTAGCAATTTTCATCTTGTTTTTGACTATTACACAAAAAGAAGTGGTTTTCTCTCAAGCTGCGTATGTGAGTGGCGCGTCCGTCGTCGTTACCTTACTCTTTTTACCCCTTTTGATCGCTTGTAGAGAAGAATTCTTGTTGTACAAACTCAAGAAACAAAACTTTAACCTTGATCCTTCTGTTGCTCTATCCATTGTTGAACCAAAGATTTCTTCTCAAACCACCACTAACAAATCATTTCCCACATTAGAGGAAGTAGCAGAGATTTCGCCCACCACGTGTTTCGGAAACATATGCAACAAACCAGAACGAGGCGAAGATTTCACCATCTTGCAAGCCATCTTTAGCAAAGATATGGCTCTTATTTCTTTAGCTACTTTTTCTGGATGTGGGTCTTCTCTTGCAGCCATTGATAATTTAGGCCAAATTGGTGAATCACTTGGCTATCCACCACGAGCTATAAGCATATTGGTTTCATGGGTTTCCATATTCAATTTCTTTGGCAGAGTCTTCTCAGGTTTCATCTCCGAAAACTTGATTATCAAATACAGATTACCTCGTCCTTTAACATTTGCTTTTGCCTTTCTTCTCACTTGCATTGGCCAGCTTTGCATCGCGTATCCATTTCCGGGTTCGGTCTACGTCGCTTCGATTGTTATCGGGTTCGGATTTGGAGCTCAAAATCCATTACTATTCGCGGTAATCTCAGAGATGTTTGGACTAAAACATTACGCCATATTGTTCAATTGTGGGCAATTGGTAGTCCCAATAGGGTCTTATATACTAAATGTGGATATAGTTGGGAAATTGTATGATAGAGAAGCTTTACGTGAAGGTAGAAAGATGACGGGCAAGGGGATAACTTGCACCGGAGCTCATTGTTTTAGTGGATCTTTCACAATTTTGGCTGCAGTGACATTGTTTGGAGCTTTGGTTATGCTTGTGTTGGCTTATAGGGCACGAGAATACTATAAATGGGATGTATATAAGAATTGCCGAGAGGATATATGGATTCCCCAAGAAGAAATGGAGTTCTATCGCTTAGACAACAGGAAGAACATTGATGACTAA | 3576 | 41.22 | MKDMLMSRLITIVNSSPQVTMADNFLPETCRFLKQLGEGRWFSVFASFLIMIGAGSTYVFGTYSKVLKTQFDYDQTQINTLGFAKDLGSNLGVFAGLLGEVAPPWVLFIVGSSLNFYSYFMIWLSITRRIAKPSLWKMFFYISLAANSQNFANTAVLVTSVRNFPDRRGIILGLLKGFVGIGGAILTQFYLAIYGHENPASLVLLLSWLPTFVSLVFCLVIRTINIRKHPEELRVLYHLLYVSVILALFLLFLTITQKQAEFSSAGYISGAAVIVGLLSIPLLIAIREELILFKLNKQTNKIQPTPVFVPEQKPSSNPPPTNNDSLTPLEEISETDSPSCFSNILNKPERGSDYTILQALFSKDMALVFVGTLCGCGSSLAAIDNIGQIGESLGYPSQSISIFVSWVSIFNFFGRVGSGFISETLMTKYKLPRPLMFAFSHLLTCIGMLFIAFPYSGSIYIASLIIGFGFGAQVPMVFAIISELFGLKYYATIFNCAQLAVPIGSYVLNVDVIGRLYDIEAIKDGGIKNGKGLTCHGIHCFSGSFLILAVVVLIGALASLVLAFRTRDFYRGDVYKKYKEDMWIPQSDMEFYCLDNKKKVDNNLQRTVMPPKYTMGSEAWAFTKQVIEGRWFSVFAGMMMMIGNGSTYIYGTYSKVVKAEFNYSQTQINTLGFAKDLGSNAGIFAGLLSEVVPTWVLFMIGAAQNFTGYFFIWLAITRRIPQPKFWQMFLFVCFGTNSSNFSNTGIMVHSVRNFPDRRGIILGLLKGYVGIGGAILTQVYLGIYGPEDPSNLVLLFAWFPTTVILLLFTSIRPIRIRKHPEELKVFYHLLYVSVVLAIFILFLTITQKEVVFSQAAYVSGASVVVTLLFLPLLIACREEFLLYKLKKQNFNLDPSVALSIVEPKISSQTTTNKSFPTLEEVAEISPTTCFGNICNKPERGEDFTILQAIFSKDMALISLATFSGCGSSLAAIDNLGQIGESLGYPPRAISILVSWVSIFNFFGRVFSGFISENLIIKYRLPRPLTFAFAFLLTCIGQLCIAYPFPGSVYVASIVIGFGFGAQNPLLFAVISEMFGLKHYAILFNCGQLVVPIGSYILNVDIVGKLYDREALREGRKMTGKGITCTGAHCFSGSFTILAAVTLFGALVMLVLAYRAREYYKWDVYKNCREDIWIPQEEMEFYRLDNRKNIDD | 1191 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 2913026 | 2922118 | - | ClCG03G002540.2 | Cla03g00247 | 268747 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla03g00247 | 1191 | PANTHER | UNCHARACTERIZED NODULIN-LIKE PROTEIN | 28 | 581 | - | - | |
| Cla03g00247 | 1191 | SUPERFAMILY | MFS general substrate transporter | 631 | 1156 | IPR036259 | - | |
| Cla03g00247 | 1191 | CDD | MFS_Mch1p_like | 39 | 556 | - | - | |
| Cla03g00247 | 1191 | SUPERFAMILY | MFS general substrate transporter | 42 | 568 | IPR036259 | - | |
| Cla03g00247 | 1191 | Pfam | Nodulin-like | 40 | 286 | IPR010658 | - | |
| Cla03g00247 | 1191 | Pfam | Nodulin-like | 630 | 875 | IPR010658 | - | |
| Cla03g00247 | 1191 | MobiDBLite | consensus disorder prediction | 306 | 328 | - | - | |
| Cla03g00247 | 1191 | Gene3D | MFS general substrate transporter like domains | 365 | 814 | IPR036259 | - | |
| Cla03g00247 | 1191 | Gene3D | MFS general substrate transporter like domains | 954 | 1184 | IPR036259 | - | |
| Cla03g00247 | 1191 | PANTHER | PROTEIN NUCLEAR FUSION DEFECTIVE 4 | 28 | 581 | - | - | |
| Cla03g00247 | 1191 | PANTHER | PROTEIN NUCLEAR FUSION DEFECTIVE 4 | 615 | 1170 | - | - | |
| Cla03g00247 | 1191 | PANTHER | UNCHARACTERIZED NODULIN-LIKE PROTEIN | 615 | 1170 | - | - | |
| Cla03g00247 | 1191 | Pfam | Major Facilitator Superfamily | 975 | 1157 | IPR011701 | GO:0022857|GO:0055085 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla03g00241 | Cla-Chr3:2872135 | Cla03g00247 | Cla-Chr3:2913026 | 0 | dispersed | |
| Cla03g00247 | Cla-Chr3:2913026 | Cla08g00796 | Cla-Chr8:20364090 | 1.15E-162 | dispersed | |
| Cla05g02173 | Cla-Chr5:33299318 | Cla03g00247 | Cla-Chr3:2913026 | 1.11E-10 | dispersed | |
| Cla03g00246 | Cla-Chr3:2908797 | Cla03g00247 | Cla-Chr3:2913026 | 0 | tandem | |
| Cla03g00247 | Cla-Chr3:2913026 | Cla03g00248 | Cla-Chr3:2926500 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla03g00247 | - | - | csv:101204150 | 982.245 |