Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00254 ATGGGAGATGTAGAAGGTTCCCCAGGAAGCTCTATGCATGGGGTGACCGGAAGAGAGCAAAGTTTTGCATTTTCCGTAGCTTCCCCAATTGTCCCAACGGACACAACCGCGAAATTTGCATTACCCGTTGACTCTGAGCACAAAGCGAAGGTTTTCAAGGTGTGGTCTTTAGCCAACCCCCACATGAGAACCTTCCACCTTTCTTGGATTTCCTTCTTTACATGCTTCGTCTCCACATTCGCAGCCGCCCCTCTGGTCCCCATCATTCGAGACAATCTCAACCTCACCAAAGTTGACATCGGTAACGCCGGAGTCACCTCCGTGTCTGGCAGTATCTTCTCTCGTCTTGTAATGGGGGCTGTGTGTGACCTTCTGGGGCCACGCTATGGGTGTGCCTTTCTCATTATGCTCTCCGCCCCCACCGTGTTTTGTATGTCCTTTGTGTCCAACGCTGCTGGGTATATAGCTGTGAGATTCATGATTGGCTTCTCGCTTGCCACCTTCGTCTCCTGCCAGTATTGGATGAGCACCATGTTCAACAGTCAGATCATTGGGCTTGTGAATGGGACTGCTGCTGGGTGGGGGAATATGGGCGGAGGAGCCACTCAGCTCATCATGCCTTTGTTGTACGATGTCATTCAGAGAGCTGGCGCTACTCCTTTCACTGCTTGGAGGATTGCCTTCTTTATCCCTGGTTCCCTTCATATTCTCATGGGCATTTTGGTCTTAACTCTTGGCCAGGACTTGCCTGATGGTAACCTTACCAGTCTTCAGAAGAAGGGCAATGTTGCCAAAGATAAATTCTCCAATATCCTGTGGTACGCTGTCACCAATTACCGAACTTGGATCTTCGTCCTCCTCTATGGCTACTCCATGGGCGTCGAACTTTCCACCGATAACGTCATTGCCGAATACTTCTACGACAGGTTTGATCTAAAGCTACACACGGCAGGAATTATCGCAGCAACGTTCGGGATGGCGAATCTAGTGGCTCGACCGTTCGGGGGGTATGCATCGGACGTGGCAGCGCGGTACTTTGGGATGAGAGGAAGGCTGTGGACTTTGTGGATCCTACAAACATGTGGGGGAGTGTTTTGCATGTGGCTTGGGAAAGCAAACAAACTGCCAACAGCAATAGTTGCAATGATATTGTTCTCAATAGGAGCACAGGCTGCATGTGGAGCAACATTTGGGATCATTCCCTTCATTTCTCGACGGTCTTTAGGAATTATATCAGGACTGACAGGAGCAGGAGGAAACTTTGGAAGTGGTTTGACACAATTAGTGTTCTTCTCAACCACCAAATACTCAACAGACACAGGCTTGTTCTTGATGGGAATAATGATTGTATGTTGCACTTTACCAGTCAGTTTGGTTCATTTCCCTCAATGGGGAAGCATGTTTTTACCTCCCACGAAACATGTTGAAAAATCCACTGAGGAATTTTATTATGGTTCTGAATGGACTGAGGATGAAAAGAAGAAGGGTTTGCATCAACAAAGCATTAAGTTTGCTGAGAATAGCAGATCTGAACGTGGTAGGCGTGTGGCTTCAGCTCCAACTCCACCAAATACAACTCCTTCCCATGTTTGA 1593 48.15 MGDVEGSPGSSMHGVTGREQSFAFSVASPIVPTDTTAKFALPVDSEHKAKVFKVWSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKVDIGNAGVTSVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVSNAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSQIIGLVNGTAAGWGNMGGGATQLIMPLLYDVIQRAGATPFTAWRIAFFIPGSLHILMGILVLTLGQDLPDGNLTSLQKKGNVAKDKFSNILWYAVTNYRTWIFVLLYGYSMGVELSTDNVIAEYFYDRFDLKLHTAGIIAATFGMANLVARPFGGYASDVAARYFGMRGRLWTLWILQTCGGVFCMWLGKANKLPTAIVAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSTTKYSTDTGLFLMGIMIVCCTLPVSLVHFPQWGSMFLPPTKHVEKSTEEFYYGSEWTEDEKKKGLHQQSIKFAENSRSERGRRVASAPTPPNTTPSHV 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3023963 3025946 + ClCG03G002620.2 Cla03g00254 268754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00254 530 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
Cla03g00254 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 527 IPR044772 GO:0015112
Cla03g00254 530 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112
Cla03g00254 530 Gene3D MFS general substrate transporter like domains 58 254 IPR036259 -
Cla03g00254 530 Gene3D MFS general substrate transporter like domains 264 464 IPR036259 -
Cla03g00254 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE 1 527 - -
Cla03g00254 530 SUPERFAMILY MFS general substrate transporter 58 459 IPR036259 -
Cla03g00254 530 MobiDBLite consensus disorder prediction 490 513 - -
Cla03g00254 530 MobiDBLite consensus disorder prediction 490 530 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00254 Cla-Chr3:3023963 Cla05g02561 Cla-Chr5:36898918 0 dispersed
Cla03g00254 Cla-Chr3:3023963 Cla03g00255 Cla-Chr3:3036860 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00254 K02575 - csv:101218006 1046.57